Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5400
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    98   9e-22
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.60 
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   5.6  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   7.4  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 98.3 bits (234), Expect = 9e-22
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
 Frame = +3

Query: 114 MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 290
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 291 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGE 470
           G+ +AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120

Query: 471 YLITCGY 491
           YL+  GY
Sbjct: 121 YLVGVGY 127


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -2

Query: 337 SVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 158
           +VPL   Y    + T   + S   SKP+    +S  + + P +  H++PS  ++A   ++
Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546

Query: 157 L 155
           L
Sbjct: 547 L 547


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 594 LLSLYRIYKNAVTYFPVEKILS 529
           L ++ RIYKN+    P+EK+L+
Sbjct: 169 LSAISRIYKNSEFIMPIEKVLA 190


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 196 MCGQSRKASKFQKMKWRR 249
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,180
Number of Sequences: 5004
Number of extensions: 54369
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)