Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5400
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 103 1e-22
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 103 1e-22
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 99 3e-21
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.022
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 31 0.82
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 29 3.3
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653... 28 7.6
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 7.6
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 28 7.6
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 103 bits (248), Expect = 1e-22
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +3
Query: 114 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 281
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 282 TSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 458
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 459 KLGEYLITCG 488
+LG+YL+ G
Sbjct: 121 RLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 103 bits (248), Expect = 1e-22
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +3
Query: 114 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 281
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 282 TSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 458
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 459 KLGEYLITCG 488
+LG+YL+ G
Sbjct: 121 RLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 99.1 bits (236), Expect = 3e-21
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +3
Query: 114 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 281
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 282 TSGGVTIAGTRYIYLSGTDHI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 458
G+ + GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120
Query: 459 KLGEYLITCG 488
+LG+YLI G
Sbjct: 121 RLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 207 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 299
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 272 ITANEWRRDDSGHAV-HLPQWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSA 439
+ A W + + ++ +W R Y P W+ GRRA D S+ T PT
Sbjct: 14 LRARNWSTEQATKSLKETVKWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIK 73
Query: 440 GRICRGEVRRIFNYLWLLE 496
GR+ E +I ++++LLE
Sbjct: 74 GRVSGKE--QIKHFVYLLE 90
>03_06_0222 + 32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = -1
Query: 659 PLNSSH*LRRHNLSNIKTNERSFYHFIEYTKMQLLISPWKKYYLIVLLDHG 507
P ++H + +++E Y F E+T ++LL K Y+++ + +G
Sbjct: 872 PTTTNHTFKEGFQKTTRSSEPQNYFFYEFTLVRLLTETISKVYVVICVPYG 922
>11_04_0305 -
16162063-16162096,16162282-16164365,16165283-16165351,
16168317-16169288,16169548-16169650,16170427-16170509
Length = 1114
Score = 27.9 bits (59), Expect = 7.6
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +1
Query: 592 KDRSFVLIFDKLWRRNQWDEF 654
K ++F+L+ D +W W++F
Sbjct: 316 KGKNFILVLDDMWTERAWNDF 336
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 292 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 167
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 284 EWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEDTA 394
E RRD + +WH+ Y R+A QG A + + A
Sbjct: 684 ETRRDLNRKKAQFEEWHQRYMERKASQGEDANNSEVA 720
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,490,628
Number of Sequences: 37544
Number of extensions: 366316
Number of successful extensions: 942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -