Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5396
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 43 4e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.005
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.007
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.013
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.029
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.029
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.038
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.088
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 31 0.088
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 31 0.088
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.36
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 29 0.62
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.62
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.62
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.82
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 0.82
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.4
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 27 1.9
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 27 2.5
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.5
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 4.4
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 4.4
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 5.8
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 5.8
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 7.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 42.7 bits (96), Expect = 4e-05
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
G L+ E SL+D F FGE+ DC V+RD T +S+G+G
Sbjct: 168 GGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFG 207
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 410 DLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
+L P I+ ++L D F+ FG+I C+V D + +KGYG
Sbjct: 174 NLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYG 211
Score = 32.3 bits (70), Expect = 0.051
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 410 DLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
+L EI Q D F FGEI+ +V+D Q K +G+G
Sbjct: 267 NLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFG 304
Score = 31.1 bits (67), Expect = 0.12
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGY 523
G+L P + L + F G ++ RV RD T +S GY
Sbjct: 85 GELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGY 123
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.007
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 431 TQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
TQ L++ F+ FG I C + P T SKGYG
Sbjct: 434 TQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.013
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
G LS ++ Q L F +G I RV+ D Q+ +SKGYG
Sbjct: 268 GRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Score = 30.7 bits (66), Expect = 0.15
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
G+LS L AF G+I R+ DPQ+ + KG+G
Sbjct: 371 GNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFG 410
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.1 bits (72), Expect = 0.029
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 392 SHFSFGDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGY 523
++ G+L ++ + F+ FGE D +VRD +T KSKG+
Sbjct: 31 AYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGF 74
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.1 bits (72), Expect = 0.029
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAP-FGEISDCRVVRDPQTLKSKGYG 526
GDLSP + + FA + +++ DPQT S+GYG
Sbjct: 191 GDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYG 231
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.7 bits (71), Expect = 0.038
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 413 LSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
++ ++ L+ F+ FG ++ R++R+P T S+G+G
Sbjct: 108 IASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFG 145
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.5 bits (68), Expect = 0.088
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 413 LSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGY 523
L+P + + L+ F+ FG+I C+V+RD +T S Y
Sbjct: 251 LNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQY 287
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 31.5 bits (68), Expect = 0.088
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGY 523
G+L+ E E + L F G I R+VRDP+T KG+
Sbjct: 275 GNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGF 313
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.5 bits (68), Expect = 0.088
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
G++ ++ Q + + F G + ++V DP+T KGYG
Sbjct: 12 GNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYG 51
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.5 bits (63), Expect = 0.36
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
G+L P ++ + L D F+ G++ V + +SKGYG
Sbjct: 104 GNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYG 143
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 28.7 bits (61), Expect = 0.62
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 172 QLIYVRTNLKHFNSQLRDCSSRFHLAYFKILRFFYFEFLDFIIP--FKS 32
QL Y + H S+LR+CS F+ ++ + + FL+ I+P FKS
Sbjct: 557 QLAYEGIQIDH--SRLRECSFCFYAVLARVYKEEFAPFLEHIVPALFKS 603
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 28.7 bits (61), Expect = 0.62
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
G++ E+ + + D F G + ++V DP++ + KGYG
Sbjct: 10 GNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYG 49
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 28.7 bits (61), Expect = 0.62
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 410 DLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGY 523
+LS + + L+D F FG I + +D +T ++KG+
Sbjct: 208 NLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGF 245
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.82
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 440 LKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
L+D F+PFG I + P + SKGYG
Sbjct: 400 LEDLFSPFGSILSSMLACYPNSGISKGYG 428
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 0.82
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 434 QSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
+ +K F PFG+I + RD Q +SKG+G
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRDDQN-RSKGFG 383
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 413 LSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKG 520
L+ + ++ L D F G + D ++VRD + +SKG
Sbjct: 247 LANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKG 282
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEI 472
G+L+P + L +AF PFGEI
Sbjct: 11 GNLAPSVTESLLYNAFIPFGEI 32
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 413 LSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGY 523
LS + + ++ F +G I RVVR+ T KS GY
Sbjct: 107 LSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGY 143
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
G+L E LK+ F G+I R++ T K KG+G
Sbjct: 233 GNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFG 272
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 410 DLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKGYG 526
+L+ + + L + F+ G I VV +P+T +++GYG
Sbjct: 11 NLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYG 49
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 515 SI*GSVDREPPGSRIFHRTARRH 447
+I GSVD++PP S H++ R++
Sbjct: 72 NIIGSVDQQPPVSHTSHKSRRQY 94
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 410 DLSPEIETQSLKDAFAPFGEISDCRVVRDPQTLKSKG 520
++SP + ++ L+ F FGE+ D + +P T S G
Sbjct: 100 NISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLG 136
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 407 GDLSPEIETQSLKDAFAPFGEISDCRVV 490
G + P+ + + D F +G+I DC+++
Sbjct: 9 GRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 440 LKDAFAPFGEISDCRVVRDPQTLKSKGY 523
LK F PFG++ + D +T KG+
Sbjct: 339 LKSLFGPFGQLEQVHMPIDKKTNNPKGF 366
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 553 LIFSNMKTKPVSFRFEGLWIANHPAVGY 470
L++ N T+ + R +W + HPA GY
Sbjct: 288 LLYQNPLTQRMLERILYVWASRHPASGY 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,600
Number of Sequences: 5004
Number of extensions: 26629
Number of successful extensions: 93
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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