Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5395
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    28   1.5  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   2.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.6  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    27   3.5  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.1  

>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 648 FKHPRYIYKNLYTDKNPSVLSTLSSCFQCVKIKNADYSFQKKKNSTM 508
           FKH +   +++ T KNPS+ S+ ++  Q   +  A  +F    +S++
Sbjct: 119 FKHRKRNVESILTPKNPSLFSSSNAASQRGSLNTAPSNFAYSHSSSL 165


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -3

Query: 669 KPVNTYYFKHPRYIYKNLYTDKNP---SVLSTLSSCFQCVKIKNADYSFQKKK 520
           +P +  Y     Y  K  YT   P   S    L  C  C+K  N+D+  Q+ K
Sbjct: 99  QPTSIRYLYFGTYRIKPWYTSPYPEEYSCAKNLYICESCLKYMNSDHVLQRHK 151


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 318  CSELYLMFKFCLLIVSMKCILKNKLTKHFAN-CLDAKMN 431
            C E +L +   + ++S++C L +++    A+ CLDA  N
Sbjct: 1735 CKEWFLRYPSQITLLSLRCTLCHEIETGIADCCLDAVFN 1773


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
 Frame = -2

Query: 391 NLFFSIHFIDTISRQNLNIKYNSEQPKYYD*LD-------TFYSYAYPISH 260
           NL  S++      + NL  +Y+SE PKY   LD         +SY Y  S+
Sbjct: 139 NLDSSLNLTVASPKSNLYYRYSSESPKYAKILDCPDEILQLIFSYCYDASY 189


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 686  IANKNKNPLTHIILNTPDI 630
            + N  ++ +THIILN PDI
Sbjct: 1384 LENPMQSKVTHIILNLPDI 1402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,145
Number of Sequences: 5004
Number of extensions: 64009
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)