Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5394
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0479 + 34217170-34217172,34217337-34217786 48 6e-06
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 46 2e-05
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 46 2e-05
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 42 5e-04
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 41 9e-04
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 41 9e-04
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 38 0.006
05_01_0103 + 686770-687017,687120-687270 37 0.011
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 34 0.10
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 29 2.9
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +1
Query: 418 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQ 564
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +++
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDE 55
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 415 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 567
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G ++ F
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDF 62
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 415 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 567
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G+R YE F
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDF 75
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 415 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 567
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G+ Y+ F
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDF 75
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 421 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 567
G+ V+D CK ++E+K + R++VF I D+ +I VE +G+ YE F
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDF 62
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 415 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 567
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G+ Y+ F
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDF 320
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 424 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQF 567
+ V + K+ + E+K+ K HRYV+F I D + +I VE G Y+ F
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDF 68
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 424 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQF 567
+ V D CK + E+K + +R++++ I ++K+ + VE VGE Y+ F
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDF 49
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 424 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQF 567
+ V + K+ + E+ + K HRYV+F I D + +I VE G Y+ F
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDF 88
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 487 NDASCPS*SPRKWSCKRPKLSHQTPFFDVIHVKITPLTSPTPRQRQPE 344
++ S P +P K +PKL ++P + + + P TSPT Q P+
Sbjct: 161 SEDSTPKETPPKAEETKPKLEEKSPKAEPPKMPLPPKTSPTEPQLPPK 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,976
Number of Sequences: 37544
Number of extensions: 234135
Number of successful extensions: 554
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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