Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5394
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 50 1e-06
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 50 1e-06
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 31 0.48
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 31 0.48
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 31 0.48
Z83129-7|CAB05644.1| 256|Caenorhabditis elegans Hypothetical pr... 28 4.5
AL021508-1|CAA16431.1| 170|Caenorhabditis elegans Hypothetical ... 28 4.5
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81570-5|CAB04605.2| 321|Caenorhabditis elegans Hypothetical pr... 27 7.9
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 412 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQF 567
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEF 53
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 412 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQF 567
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEF 53
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 412 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 531
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 412 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 531
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 412 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 531
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>Z83129-7|CAB05644.1| 256|Caenorhabditis elegans Hypothetical
protein W06G6.12 protein.
Length = 256
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 279 YFDACAYWLPSKRAYQHSEQCRSGCRCRGVGEVSGVIFT 395
+++ CAYW+ + + Q C C CR V+ + T
Sbjct: 119 HWECCAYWVSKRMSSQEHHTC-PNCNCRVKAHVAFSLVT 156
>AL021508-1|CAA16431.1| 170|Caenorhabditis elegans Hypothetical
protein Y70C5B.1 protein.
Length = 170
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 279 YFDACAYWLPSKRAYQHSEQCRSGCRCRGVGEVSGVIFT 395
+++ CAYW+ + + Q C C CR V+ + T
Sbjct: 33 HWECCAYWVSKRMSSQEHHTC-PNCNCRVKAHVAFSLVT 70
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +1
Query: 475 KKHRYVVFYIRDEKQIDVETVGERNAEYEQFPRGGAPVPNSPYR 606
KK V +R EK + T + N PRGGA V NSP R
Sbjct: 778 KKTTQEVNALRKEKAVAAATARQAN---RGTPRGGAAVTNSPAR 818
>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +1
Query: 475 KKHRYVVFYIRDEKQIDVETVGERNAEYEQFPRGGAPVPNSPYR 606
KK V +R EK + T + N PRGGA V NSP R
Sbjct: 778 KKTTQEVNALRKEKAVAAATARQAN---RGTPRGGAAVTNSPAR 818
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +1
Query: 475 KKHRYVVFYIRDEKQIDVETVGERNAEYEQFPRGGAPVPNSPYR 606
KK V +R EK + T + N PRGGA V NSP R
Sbjct: 778 KKTTQEVNALRKEKAVAAATARQAN---RGTPRGGAAVTNSPAR 818
>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +1
Query: 475 KKHRYVVFYIRDEKQIDVETVGERNAEYEQFPRGGAPVPNSPYR 606
KK V +R EK + T + N PRGGA V NSP R
Sbjct: 778 KKTTQEVNALRKEKAVAAATARQAN---RGTPRGGAAVTNSPAR 818
>Z81570-5|CAB04605.2| 321|Caenorhabditis elegans Hypothetical
protein K12G11.5 protein.
Length = 321
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 149 FIVT*IYQDDNVTIITRTF*HCSLQWLIIYISRYLM 42
FI T +Y D I T+ S Q IIY S+YLM
Sbjct: 135 FISTLLYADRLRNISIETYLRTSKQQFIIYSSQYLM 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,352,898
Number of Sequences: 27780
Number of extensions: 229096
Number of successful extensions: 689
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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