Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5393
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    30   0.34 
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   3.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.5  

>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 627 PANEIRP*FLVHEDLDSCYYQNFAKSRTISF 535
           P  +IRP F VHE +D   Y NF +++  SF
Sbjct: 701 PTRDIRPDFNVHELVDHGTYPNFHQNQADSF 731


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 11  HCFSLRNKENHSTAYLLLGLKVSQLIFN 94
           H +S   KEN +   LLLGL + +L+F+
Sbjct: 428 HDYSESTKENSAPDSLLLGLVLDELVFS 455


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 87   ISWLTFRPSKR*AVLWFSLFRS 22
            +SW T  PS+R A   F LFRS
Sbjct: 1577 LSWATTCPSRRLACNSFQLFRS 1598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,912
Number of Sequences: 5004
Number of extensions: 56656
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)