Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5393
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79596-6|CAJ43438.1|  225|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z79596-5|CAB01858.3|  369|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z79596-6|CAJ43438.1|  225|Caenorhabditis elegans Hypothetical
           protein C02C6.3b protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 436 LISIFK*AKV*KLSIMNLNQAFFHKNPFSLLC 531
           ++ +F+ AK+  L +++L+  F H  PF + C
Sbjct: 52  MLEMFRQAKLEYLQVLDLSYNFIHNVPFEIAC 83


>Z79596-5|CAB01858.3|  369|Caenorhabditis elegans Hypothetical
           protein C02C6.3a protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 436 LISIFK*AKV*KLSIMNLNQAFFHKNPFSLLC 531
           ++ +F+ AK+  L +++L+  F H  PF + C
Sbjct: 196 MLEMFRQAKLEYLQVLDLSYNFIHNVPFEIAC 227


>Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical
           protein F07A5.3 protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 321 PNYCAHAVLTYKPERYEGETVKIMNLL*MECQVI 422
           PN   H  + Y  E Y G T+K++N L +   VI
Sbjct: 448 PNKSLHEPMIYYHEPYSGTTLKVVNRLQVNMPVI 481


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,986
Number of Sequences: 27780
Number of extensions: 313556
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)