Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5391
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   5.0  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   5.0  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   6.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.5  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.7  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   8.7  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   8.7  

>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 146 CGVCLARASTSQNG*FGQMAGWSPAGY 66
           CGVC+ +  T +N  +G+  G +P  +
Sbjct: 190 CGVCILKGKTHENLPWGEWCGNTPFAF 216


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 194 IARAASNSVPKYPADFPAALCPNY--PYCW*IHKLPTLINNKSTIF 325
           I+ AA+N V +Y   F  ++  N+  P  W I  L   INN ST+F
Sbjct: 410 ISTAAANGVYEY---FDKSMKKNWAGPEHWRIQALRKNINNASTVF 452


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -2

Query: 270  YG*LGHRAAGKSAGYLGTEFDAARAIGRMAGLRTHSGIGISLWGVLSEGVHIAERIVWAN 91
            YG  G +A    +G+  T +DA        G    +G+G    G L++G  +  R++ AN
Sbjct: 1122 YGWFGDKAI---SGWSNTNYDAYAYWHVTTG---QTGMGSFSMGTLTQGSFLPIRLIVAN 1175

Query: 90   GWVESGW 70
            G  + G+
Sbjct: 1176 GGGKGGF 1182


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 164 EWVRNPAILPIARAASNSVPKYPADFPAALCP 259
           +W    A L +  + ++S PK  AD+ AAL P
Sbjct: 151 KWPSKVAALQLLGSLASSSPKAVADYMAALIP 182


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 393 STVTWLINVFNLLNYIYKKCTSAKIVDLLLISVGSL 286
           S+ T   +VFN L ++Y K TS KI++ L+  +G L
Sbjct: 347 SSGTVYFSVFNSLFFMYSKLTS-KILNTLVGGLGIL 381


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 402 DDNSTVTWLINVFNLLNYIYKKCTSAKIVDL 310
           +D+ TVTWL        YI++   S +I ++
Sbjct: 216 NDSETVTWLNTFLQQFWYIFEPSLSERITEI 246


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 122 TPSLSTPHREMPIPEWVRNPAILPIARAASNSVPKYPADFPAALCPNY 265
           T S STP+R++  P          I   A N V   P D  + L P +
Sbjct: 274 TSSFSTPNRKVSQPSDFSASPSRSIVSPAKNIVGSTPVDVLSKLTPEF 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,059
Number of Sequences: 5004
Number of extensions: 64692
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)