Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5391
(610 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81550-3|CAD44141.1| 548|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z81550-2|CAB04478.2| 548|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.64
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 29 2.0
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 2.6
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 2.6
Z99283-3|CAB16538.1| 327|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical p... 28 6.0
Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat resp... 28 6.0
U23510-14|AAO38611.1| 199|Caenorhabditis elegans Hypothetical p... 27 7.9
U23510-13|AAK71392.2| 425|Caenorhabditis elegans Hypothetical p... 27 7.9
>Z81550-3|CAD44141.1| 548|Caenorhabditis elegans Hypothetical
protein F55F3.2b protein.
Length = 548
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 484 QSVGTLLKCVTSIHYDSPDMYSANNDLPNNRFSPSLCQ*N 603
QS GT+L C+ ++ YD + +A+N LP +R S+ Q N
Sbjct: 266 QSFGTILTCLRNVTYDK--IVAADNSLPGHRMKWSIVQDN 303
>Z81550-2|CAB04478.2| 548|Caenorhabditis elegans Hypothetical
protein F55F3.2a protein.
Length = 548
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 484 QSVGTLLKCVTSIHYDSPDMYSANNDLPNNRFSPSLCQ*N 603
QS GT+L C+ ++ YD + +A+N LP +R S+ Q N
Sbjct: 266 QSFGTILTCLRNVTYDK--IVAADNSLPGHRMKWSIVQDN 303
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 31.1 bits (67), Expect = 0.64
Identities = 22/73 (30%), Positives = 27/73 (36%)
Frame = +2
Query: 59 PASTQPDSTQPFAQTIRSAMWTPSLSTPHREMPIPEWVRNPAILPIARAASNSVPKYPAD 238
P T P T+P +T P + P E P E P P + PK +
Sbjct: 367 PPKTDPPRTEP-PKTEPPTTEPPKIEPPRTEPPKTE--PPPTEPPKTEPPKTTPPK--TE 421
Query: 239 FPAALCPNYPYCW 277
P PN PYCW
Sbjct: 422 PPTTEPPNIPYCW 434
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 303 STTSQRFLRMYTFYIYNLED*TH*SAMLLWNYHLISNKTLTAQHGLGIT 449
S T RF R+Y +Y+ + T+ S + W I + L A+ LG++
Sbjct: 238 SQTFYRFKRLYGYYVLQMYLPTYLSVFISWIAFWIDTRALPARITLGVS 286
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 219 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 350
C ++ Y LT H E+ YLR T Q+ L + Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 219 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 350
C ++ Y LT H E+ YLR T Q+ L + Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404
>Z99283-3|CAB16538.1| 327|Caenorhabditis elegans Hypothetical
protein Y70C5C.4 protein.
Length = 327
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 494 ALCLNA*PPFIMIVLICIPRIMTSQITDFLLVFVN 598
ALC+ PF+++++ C ++S + F ++F+N
Sbjct: 242 ALCVQVTVPFVVVLVPCFYLNVSSALEHFDMIFIN 276
>Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 59 PASTQPDSTQPFAQTIRSAMWTPSLSTPHREMPIPEWVRNPAILPIARAASN 214
PA++ P +T P TI+ + ST + P P ++N LP+ N
Sbjct: 12 PATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQIPLPVPNLPLN 63
>Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 59 PASTQPDSTQPFAQTIRSAMWTPSLSTPHREMPIPEWVRNPAILPIARAASN 214
PA++ P +T P TI+ + ST + P P ++N LP+ N
Sbjct: 12 PATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQIPLPVPNLPLN 63
>AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat
responsive protein protein.
Length = 295
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 59 PASTQPDSTQPFAQTIRSAMWTPSLSTPHREMPIPEWVRNPAILPIARAASN 214
PA++ P +T P TI+ + ST + P P ++N LP+ N
Sbjct: 12 PATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQIPLPVPNLPLN 63
>U23510-14|AAO38611.1| 199|Caenorhabditis elegans Hypothetical
protein R12C12.8b protein.
Length = 199
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 601 FIDKD*EKICYLGGHYSRNTYQDYHNEWRSRI*AECPQIDGMI 473
F D++ K C L S ++ YHN WR+RI C ++ M+
Sbjct: 121 FADENCPKACRL----SCSSLCQYHNVWRTRIIGNCCIVNQML 159
>U23510-13|AAK71392.2| 425|Caenorhabditis elegans Hypothetical
protein R12C12.8a protein.
Length = 425
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 601 FIDKD*EKICYLGGHYSRNTYQDYHNEWRSRI*AECPQIDGMI 473
F D++ K C L S ++ YHN WR+RI C ++ M+
Sbjct: 347 FADENCPKACRL----SCSSLCQYHNVWRTRIIGNCCIVNQML 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,700
Number of Sequences: 27780
Number of extensions: 375480
Number of successful extensions: 863
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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