Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5388
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   2.9  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    25   6.6  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   8.7  

>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 446 RCLYRCSWSPL*ADILISDHLLYVSL 369
           R L    W+P+ A+ +I  HLLY+++
Sbjct: 204 RSLALSGWNPVPAEFVIQGHLLYLTV 229


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 122 RSCRLSHKRETMSRKISPRV 181
           RSCR+  K  T++++I P++
Sbjct: 44  RSCRIDAKSNTLTKEIFPKI 63


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 FALTLFFKSKTSFFWCKF 261
           F  TLF+K + S FW +F
Sbjct: 202 FPPTLFYKPRRSIFWRRF 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,571
Number of Sequences: 5004
Number of extensions: 43115
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)