Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5388
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0003 + 11509530-11512772                                         28   3.8  
07_03_1436 - 26543846-26546806                                         27   6.6  
05_04_0037 - 17399402-17400934                                         27   6.6  
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906...    27   6.6  
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451...    27   8.8  
01_05_0256 - 19994072-19995268                                         27   8.8  

>01_03_0003 + 11509530-11512772
          Length = 1080

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 144  NVRQCPGKSVPELSKAVQLHECIKLP 221
            N  +CP  ++P   + +Q+++C+ LP
Sbjct: 988  NGSECPNSTLPARLEVIQIYDCMSLP 1013


>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 368 TRIHTEDD-QKSGCPLKAGTNYIYKDTFSYSQY 463
           +R++T D    S CP    +N++ KD F Y Q+
Sbjct: 651 SRVNTFDKIMNSQCPHHPNSNHVAKDCFVYKQF 683


>05_04_0037 - 17399402-17400934
          Length = 510

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 368 TRIHTEDD-QKSGCPLKAGTNYIYKDTFSYSQY 463
           +R++T D    S CP    +N++ KD F Y Q+
Sbjct: 176 SRVNTFDKIMNSQCPHHPNSNHVAKDCFVYKQF 208


>01_06_0939 -
           33188620-33189252,33189570-33189680,33190460-33190668,
           33190781-33191078
          Length = 416

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 319 IISHSHCFLNPRHLFS 272
           I+S S C++NPRH FS
Sbjct: 346 IVSTSFCYVNPRHHFS 361


>02_03_0080 +
           14935664-14935796,14943858-14944175,14944352-14945199,
           14945249-14945521
          Length = 523

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 368 TRIHTEDD-QKSGCPLKAGTNYIYKDTFSYSQY 463
           +R++T D    S CP    +N+  KD F Y Q+
Sbjct: 210 SRVNTSDKIMNSQCPHHPNSNHAAKDCFVYKQF 242


>01_05_0256 - 19994072-19995268
          Length = 398

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 368 TRIHTEDD-QKSGCPLKAGTNYIYKDTFSYSQY 463
           +R++T D    S CP    +N++ KD F Y Q+
Sbjct: 64  SRVNTFDKIMNSQCPHHPNSNHVAKDYFVYKQF 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,655,434
Number of Sequences: 37544
Number of extensions: 250325
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)