Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5388
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.2  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   3.2  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +3

Query: 342 WCRRNVCLPQGYIQKMIRNQDVRSKRGPTTSIKTPFPILSILP 470
           +CR   CL  G  ++ ++ +  R+K    + +++   + S +P
Sbjct: 164 YCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMP 206


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +3

Query: 342 WCRRNVCLPQGYIQKMIRNQDVRSKRGPTTSIKTPFPILSILP 470
           +CR   CL  G  ++ ++ +  R+K    + +++   + S +P
Sbjct: 164 YCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMP 206


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 143 CG*DDSCEGQTNKSARFKHYDVC 75
           CG  +   G  N+  RFKH D C
Sbjct: 37  CGHGNKSSGP-NELGRFKHTDAC 58


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 143 CG*DDSCEGQTNKSARFKHYDVC 75
           CG  +   G  N+  RFKH D C
Sbjct: 42  CGHGNKSSGP-NELGRFKHTDAC 63


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 143 CG*DDSCEGQTNKSARFKHYDVC 75
           CG  +   G  N+  RFKH D C
Sbjct: 42  CGHGNKSSGP-NELGRFKHTDAC 63


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 96  TSAFVCLALAAVVSATNVRQCPGKSVPELS--KAVQLH 203
           TSA V L +  V++ T +      S+P +S  KA+ ++
Sbjct: 270 TSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIY 307


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 375 YIQKMIRNQDVRSKRGPTTSIKTPFP 452
           YI++ +  +D RS RGP      P P
Sbjct: 32  YIRQAVAMRDPRSNRGPVLFPPGPPP 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,984
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)