Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5387
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    29   2.5  
06_03_0784 - 24557089-24557198,24557296-24560725                       28   4.4  
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694...    28   5.9  
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339...    27   7.7  

>06_03_0783 -
           24546403-24546765,24547202-24547262,24547899-24548004,
           24548118-24551600,24553134-24553179
          Length = 1352

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 557 LFTKSYS*EPVLLINIYIPIEYI-*LGYTSGALFCTFRIF 441
           LF K Y  EP +L+N++I  E+I   G+T G+L  T R +
Sbjct: 487 LFPKGYYFEPGILVNMWIAHEFIQDHGHTYGSLRSTGRSY 526


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 557 LFTKSYS*EPVLLINIYIPIEYI*LG-YTSGALFCTFRIF 441
           LF K Y  EP +L+N++I  E+I  G +T G+L  T R +
Sbjct: 452 LFPKGYYFEPDVLVNMWIAHEFIQDGRHTYGSLKSTGRSY 491


>04_04_0348 +
           24568834-24568904,24569019-24569148,24569310-24569459,
           24569546-24569650,24569808-24570029,24570162-24570274,
           24570371-24570470,24571125-24571325,24571401-24571549,
           24571624-24571765,24571851-24571991,24572098-24572286,
           24572622-24572835,24573198-24573291,24573671-24573905,
           24574242-24574433,24574919-24575017,24575443-24575532,
           24575709-24575912,24575994-24576269,24576974-24577096,
           24577453-24577608,24577686-24577802,24577878-24577957,
           24578173-24578377,24578485-24578687,24578882-24578933
          Length = 1350

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 197 RQNKTNINLNTFHKRSKPLLIVEVPSRGSTAYIRQ 93
           R+    + +NT H R+ PL++ +  S+GS   I Q
Sbjct: 747 REEAGKVCMNTLHWRNSPLIMSQCGSKGSPINISQ 781


>07_01_0450 -
           3395644-3395837,3396164-3396190,3396266-3396396,
           3396612-3396691,3397283-3397345,3397588-3397697,
           3398316-3398424,3398783-3398857,3399363-3399459,
           3399622-3399683,3399966-3400026,3400330-3400469,
           3400747-3400839,3401345-3401393,3401534-3401634,
           3401723-3401816,3401904-3402139
          Length = 573

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 170 NTFHKR-SKPLLIVEVPSRGSTAYIRQGCRSKSKLCLAPYRMYTSREGH 27
           N+FHK  + P ++V   S+     I   C +K K+ + PY   TS EGH
Sbjct: 128 NSFHKAVNVPDVVVFPRSQDEVQKIVMAC-NKYKVPIVPYGGATSIEGH 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,574
Number of Sequences: 37544
Number of extensions: 199246
Number of successful extensions: 292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)