Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5387
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-5|AAA97963.1|  351|Caenorhabditis elegans Spindle orienta...    29   2.3  
AB052819-1|BAC65239.1|  351|Caenorhabditis elegans PIP-1 protein.      29   2.3  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    27   9.2  

>U55363-5|AAA97963.1|  351|Caenorhabditis elegans Spindle
           orientation defective protein4 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 348 DNSDC**EYFFLKPPLY*GGGVFETFICIRSKNPECTK 461
           +N+ C  E  F+  P Y   G+F T   +++K P CTK
Sbjct: 170 ENTTCFPEAGFMMAP-YRSNGIFNTRSLVQTKPPRCTK 206


>AB052819-1|BAC65239.1|  351|Caenorhabditis elegans PIP-1 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 348 DNSDC**EYFFLKPPLY*GGGVFETFICIRSKNPECTK 461
           +N+ C  E  F+  P Y   G+F T   +++K P CTK
Sbjct: 170 ENTTCFPEAGFMMAP-YRSNGIFNTRSLVQTKPPRCTK 206


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 69  EFRFRSTPLSDVGS-TPSTWYFNDQKRLRT 155
           E+R RS P+SDV + T S  YFN  +  +T
Sbjct: 116 EYRLRSEPISDVTNLTGSVEYFNAVENCQT 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,609
Number of Sequences: 27780
Number of extensions: 194743
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)