Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5386
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    26   4.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.3  

>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 288 KHHF-----ISWSRLIEKLSFLLFSYNGRWASRK*THRRFCYSITNIKGLL 151
           KHH      I+W+R++ ++++ L+SY   +   K    RF     N   +L
Sbjct: 226 KHHIGAVNSINWARILSQITYYLYSYLSVYKQGKADDVRFIVPTGNFGDIL 276


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +2

Query: 80  LPSCHEHACPCTLKMCAPFRQSLNNNPFIFVIE*QNLRCVYFLLAHLPL 226
           LP     A PC L+ C  F   + +   +++   +N   ++  ++ LPL
Sbjct: 533 LPPVVVAATPCFLECCGDFLCCIVSTGLLYIWNIKNFEAIHSPVSTLPL 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,859
Number of Sequences: 5004
Number of extensions: 55329
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)