Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5386
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0068 - 495582-497981                                             28   5.5  
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    28   7.2  
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701...    28   7.2  
08_02_1357 - 26359701-26359804,26360749-26360852,26360967-26361379     27   9.6  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    27   9.6  

>07_01_0068 - 495582-497981
          Length = 799

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +2

Query: 374 REWMVRGSDLLY-----KEKKKQRNRRRYYCLRLVLSTFVVHYTLAARHLSGLDRAIDNR 538
           R W  R S L +      + K+Q  RRR  C R  +   V+ + +   +  G+   +D  
Sbjct: 391 RRWSERTSQLNFICYCLGKPKEQEGRRRQCCRRKTIPPSVMRFLIWVANKVGVRETLD-- 448

Query: 539 NFFQIADNPA*LVRLSFHDGR 601
           +FF I   P  +V +    GR
Sbjct: 449 DFFFIQRKPVTMVSVIGRRGR 469


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 237 LFSYNGRWASRK*THRRFC----YSITNIKGLLFKLCLNGAHIFSVHGQAC 97
           LFSYN  WA+    HRR        +    GL +K CL  A  +  +G AC
Sbjct: 199 LFSYNLGWANGGPGHRRSASVSELCLGGADGLGWKPCLYYARGYCKNGSAC 249


>04_04_1462 -
           33769122-33769151,33769385-33769426,33769571-33770158,
           33770398-33770508,33770585-33770625,33771238-33771382,
           33771578-33771781,33772626-33772769,33772991-33773183,
           33774559-33774602,33774694-33774822,33774907-33774954,
           33775058-33775120,33775198-33775236,33776694-33776767,
           33777460-33777518,33777709-33777768,33777920-33778044,
           33778693-33778751,33779418-33779511,33779572-33779625,
           33779775-33779813,33780423-33780602
          Length = 854

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 449 CLRLVLSTFVVHYTLAARHLSGLDRAIDNRNFFQIA 556
           CL    +T V+   L A H+ G  R   ++NFF++A
Sbjct: 514 CLPQAYATIVMSQHLGANHVDGGVRVRVSKNFFELA 549


>08_02_1357 - 26359701-26359804,26360749-26360852,26360967-26361379
          Length = 206

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 305 LHQTRTYKYNLTHCCHVLMYVRHREWMVRGSDL 403
           L Q R   ++ T+   V +  R R W+ RG DL
Sbjct: 58  LEQRRWTCHSTTNSTEVALAARQRRWVARGGDL 90


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 347  CHVLMYVRHREWMVRGSDLLYKEKKKQRNRRRY 445
            C+V   VR   W V  + L   E KK+RN  R+
Sbjct: 1446 CNVPQKVRIFAWRVASNSLATMENKKKRNLERF 1478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,000
Number of Sequences: 37544
Number of extensions: 332267
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)