Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5384
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    38   0.002
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    32   0.076
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   2.1  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   2.8  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   8.7  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/99 (22%), Positives = 51/99 (51%)
 Frame = +3

Query: 198 ARHANQMRNITYHVVCT*TMQYTLRIYRIGHFQFDKQFYRQHAILHVILGNYVQPSSVVH 377
           AR AN ++N     +C   + + L +  +G+FQ     +   ++ +++LG +++   +V+
Sbjct: 155 ARSAN-LKNYIAFPICLFVINHILIL--LGYFQCSYSVFYA-SVFYILLGVFIRVFYLVN 210

Query: 378 LDHFGPRQIDFVFAQIVTTDCVQLKVFNFMLIRIAAEKF 494
            + F  +++ F+F+ IV    +Q  V     I ++  +F
Sbjct: 211 KEKFEKKELAFLFSSIVVACLIQFNVLPLGTINLSVTRF 249


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
 Frame = -2

Query: 422  LGENKIDLPWTEMVKMYNTRRLDVIAKYNVQDCMLPIKLFVKLKMADSVYSQCILHR--L 249
            LG+  +  P+T  + + ++    V         ++ +   + L    + YS  +LH   +
Sbjct: 957  LGDASVAAPFTSKLAVVSSITNIVRQGRCTLVALVQMHKILALNCLITAYSLSVLHLDGI 1016

Query: 248  CTDDVICNISHLISVACFYAAITNTRINESTGKEEPDPYFFNKNDLSIISGQF 90
               D    IS ++   CFY  ++  R  E+  KE P    FN   +  + GQF
Sbjct: 1017 KFGDTQYTISGMLMSVCFYC-VSRARPLETLSKERPQAGIFNTYIIGSVLGQF 1068


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +1

Query: 49  LLRLEIPPAALSALN*PDIIDKSFLLKKYGSGSSL 153
           + + E+PPA+++ALN   + +   +LK Y +GSS+
Sbjct: 559 IAKRELPPASVNALNNFRLANGDPVLKTYLAGSSI 593


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 452 FQLNTISSYYLGENKIDLPWTEMVK-MYNTRRLDVIAKYNVQDC 324
           F+ NT+ + +    + D+ WT+ VK   +   +D+I K    DC
Sbjct: 816 FEANTVKAIWARIERNDIGWTKRVKESCSKEAVDLITKLMDPDC 859


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 272 SQCILHRLCTDDVICNISHLISVACFYAAITNTRINESTGKEEPD-PY 132
           SQ +L  +C       +  ++    F A  T+  I  STG+ EPD PY
Sbjct: 149 SQIMLGGICFQLFTIVVFSILFSIFFIALYTHHPIRPSTGRREPDVPY 196


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 371 NTRRLDVIAKYNVQDCMLPIKLFVKLKMADSVYS-QCILHRLCT 243
           N+ R+ V       D   P  L ++  +   +Y  QC++H LCT
Sbjct: 210 NSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLCT 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,511
Number of Sequences: 5004
Number of extensions: 63883
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)