Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5384
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0045 + 611166-612308                                             31   0.97 
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340...    30   1.7  
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695...    29   5.2  

>10_01_0045 + 611166-612308
          Length = 380

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 117 VFVKKIRVRLLFAGALVNARVCNGCVKARHAN 212
           VF KK+ +  +       ARV +GCVKA HA+
Sbjct: 336 VFSKKMPICFMLKNTPQGARVISGCVKAHHAD 367


>09_02_0042 -
           3402424-3402534,3403242-3403345,3403448-3403562,
           3404344-3404391,3404519-3404608,3404819-3404893,
           3405001-3405153,3405695-3405779,3408051-3408121,
           3408243-3408293,3409037-3409453,3409529-3409660,
           3409779-3409892,3411113-3411179,3411264-3411397,
           3411486-3411701,3412627-3413418
          Length = 924

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 263 ILHRLCTDDVICNISHLISVACFYAAITNTRINE 162
           I  RL   D+IC+ S L S +C+ A +T T + E
Sbjct: 719 IKRRLKERDMICDDSELFSASCYAAKVTLTALGE 752


>06_02_0333 +
           14567509-14568081,14568109-14568438,14568642-14569550,
           14569598-14569777,14570416-14570698,14571339-14571832
          Length = 922

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 165 REHRQRGAGPVFF*QKRFVNNIG-SIQRRQSRR 70
           R+H    AG  FF + + V+N+G S++R Q+R+
Sbjct: 176 RDHLDAAAGGAFFSKTKMVSNMGWSVERLQTRQ 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,660,613
Number of Sequences: 37544
Number of extensions: 377298
Number of successful extensions: 884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)