Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5384
         (747 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04088-1|AAA61209.1| 1531|Homo sapiens TOP2A protein.                  31   3.3  
AJ011741-1|CAA09762.1| 1531|Homo sapiens topoisomerase II alpha ...    31   3.3  
AF285159-1|AAG13405.1|  581|Homo sapiens topoisomerase II alpha-...    31   3.3  
AF285158-1|AAG13404.1|  536|Homo sapiens topoisomerase II alpha-...    31   3.3  
AF285157-1|AAG13403.1|  526|Homo sapiens topoisomerase II alpha-...    31   3.3  
AF071747-1|AAC77388.1| 1531|Homo sapiens topoisomerase II alpha ...    31   3.3  
BC030645-1|AAH30645.1|  364|Homo sapiens platelet derived growth...    30   7.7  
AY359116-1|AAQ89474.1|  364|Homo sapiens SCDGF-B protein.              30   7.7  
AY027518-1|AAK20082.1|  364|Homo sapiens iris-expressed growth f...    30   7.7  
AY027517-1|AAK20081.1|  370|Homo sapiens iris-expressed growth f...    30   7.7  
AF336376-1|AAK56136.1|  370|Homo sapiens platelet-derived growth...    30   7.7  
AF335584-1|AAK38840.1|  370|Homo sapiens platelet-derived growth...    30   7.7  
AB033832-1|BAB18903.1|  370|Homo sapiens spinal cord-derived gro...    30   7.7  

>J04088-1|AAA61209.1| 1531|Homo sapiens TOP2A protein.
          Length = 1531

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 638 LDD*IKPKMLLKRYDLPAAAPTTKLFINKLGNKVDTYYFNYYIHIDLYKFFSSDSNQHKV 459
           LD  I   M+ + YD+  +    K+F+N  GNK+    F  Y+ + L        N  KV
Sbjct: 231 LDKDIVALMVRRAYDIAGSTKDVKVFLN--GNKLPVKGFRSYVDMYLKDKLDETGNSLKV 288

Query: 458 ENFQLN 441
            + Q+N
Sbjct: 289 IHEQVN 294


>AJ011741-1|CAA09762.1| 1531|Homo sapiens topoisomerase II alpha
           protein.
          Length = 1531

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 638 LDD*IKPKMLLKRYDLPAAAPTTKLFINKLGNKVDTYYFNYYIHIDLYKFFSSDSNQHKV 459
           LD  I   M+ + YD+  +    K+F+N  GNK+    F  Y+ + L        N  KV
Sbjct: 231 LDKDIVALMVRRAYDIAGSTKDVKVFLN--GNKLPVKGFRSYVDMYLKDKLDETGNSLKV 288

Query: 458 ENFQLN 441
            + Q+N
Sbjct: 289 IHEQVN 294


>AF285159-1|AAG13405.1|  581|Homo sapiens topoisomerase II alpha-4
           protein.
          Length = 581

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 638 LDD*IKPKMLLKRYDLPAAAPTTKLFINKLGNKVDTYYFNYYIHIDLYKFFSSDSNQHKV 459
           LD  I   M+ + YD+  +    K+F+N  GNK+    F  Y+ + L        N  KV
Sbjct: 231 LDKDIVALMVRRAYDIAGSTKDVKVFLN--GNKLPVKGFRSYVDMYLKDKLDETGNSLKV 288

Query: 458 ENFQLN 441
            + Q+N
Sbjct: 289 IHEQVN 294


>AF285158-1|AAG13404.1|  536|Homo sapiens topoisomerase II alpha-3
           protein.
          Length = 536

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 638 LDD*IKPKMLLKRYDLPAAAPTTKLFINKLGNKVDTYYFNYYIHIDLYKFFSSDSNQHKV 459
           LD  I   M+ + YD+  +    K+F+N  GNK+    F  Y+ + L        N  KV
Sbjct: 231 LDKDIVALMVRRAYDIAGSTKDVKVFLN--GNKLPVKGFRSYVDMYLKDKLDETGNSLKV 288

Query: 458 ENFQLN 441
            + Q+N
Sbjct: 289 IHEQVN 294


>AF285157-1|AAG13403.1|  526|Homo sapiens topoisomerase II alpha-2
           protein.
          Length = 526

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 638 LDD*IKPKMLLKRYDLPAAAPTTKLFINKLGNKVDTYYFNYYIHIDLYKFFSSDSNQHKV 459
           LD  I   M+ + YD+  +    K+F+N  GNK+    F  Y+ + L        N  KV
Sbjct: 231 LDKDIVALMVRRAYDIAGSTKDVKVFLN--GNKLPVKGFRSYVDMYLKDKLDETGNSLKV 288

Query: 458 ENFQLN 441
            + Q+N
Sbjct: 289 IHEQVN 294


>AF071747-1|AAC77388.1| 1531|Homo sapiens topoisomerase II alpha
           protein.
          Length = 1531

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 638 LDD*IKPKMLLKRYDLPAAAPTTKLFINKLGNKVDTYYFNYYIHIDLYKFFSSDSNQHKV 459
           LD  I   M+ + YD+  +    K+F+N  GNK+    F  Y+ + L        N  KV
Sbjct: 231 LDKDIVALMVRRAYDIAGSTKDVKVFLN--GNKLPVKGFRSYVDMYLKDKLDETGNSLKV 288

Query: 458 ENFQLN 441
            + Q+N
Sbjct: 289 IHEQVN 294


>BC030645-1|AAH30645.1|  364|Homo sapiens platelet derived growth
           factor D protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 503 DLYKFFSSDSNQHKVENFQLNTISSYYLGENKIDLPWTEMVKMYNTRRLDVIAKYNVQDC 324
           DL K+F+ +S Q  +EN  L+T    Y G +  D       K+   R  D   +Y+    
Sbjct: 216 DLLKYFNPESWQEDLENMYLDT--PRYRGRSYHD----RKSKVDLDRLNDDAKRYSCTPR 269

Query: 323 MLPIKLFVKLKMADSV-YSQCILHRLCTDDVICNISHLISVAC 198
              + +  +LK+A+ V + +C+L + C  +  C   +  S  C
Sbjct: 270 NYSVNIREELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTC 312


>AY359116-1|AAQ89474.1|  364|Homo sapiens SCDGF-B protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 503 DLYKFFSSDSNQHKVENFQLNTISSYYLGENKIDLPWTEMVKMYNTRRLDVIAKYNVQDC 324
           DL K+F+ +S Q  +EN  L+T    Y G +  D       K+   R  D   +Y+    
Sbjct: 216 DLLKYFNPESWQEDLENMYLDT--PRYRGRSYHD----RKSKVDLDRLNDDAKRYSCTPR 269

Query: 323 MLPIKLFVKLKMADSV-YSQCILHRLCTDDVICNISHLISVAC 198
              + +  +LK+A+ V + +C+L + C  +  C   +  S  C
Sbjct: 270 NYSVNIREELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTC 312


>AY027518-1|AAK20082.1|  364|Homo sapiens iris-expressed growth
           factor short form protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 503 DLYKFFSSDSNQHKVENFQLNTISSYYLGENKIDLPWTEMVKMYNTRRLDVIAKYNVQDC 324
           DL K+F+ +S Q  +EN  L+T    Y G +  D       K+   R  D   +Y+    
Sbjct: 216 DLLKYFNPESWQEDLENMYLDT--PRYRGRSYHD----RKSKVDLDRLNDDAKRYSCTPR 269

Query: 323 MLPIKLFVKLKMADSV-YSQCILHRLCTDDVICNISHLISVAC 198
              + +  +LK+A+ V + +C+L + C  +  C   +  S  C
Sbjct: 270 NYSVNIREELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTC 312


>AY027517-1|AAK20081.1|  370|Homo sapiens iris-expressed growth
           factor long form protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 503 DLYKFFSSDSNQHKVENFQLNTISSYYLGENKIDLPWTEMVKMYNTRRLDVIAKYNVQDC 324
           DL K+F+ +S Q  +EN  L+T    Y G +  D       K+   R  D   +Y+    
Sbjct: 222 DLLKYFNPESWQEDLENMYLDT--PRYRGRSYHD----RKSKVDLDRLNDDAKRYSCTPR 275

Query: 323 MLPIKLFVKLKMADSV-YSQCILHRLCTDDVICNISHLISVAC 198
              + +  +LK+A+ V + +C+L + C  +  C   +  S  C
Sbjct: 276 NYSVNIREELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTC 318


>AF336376-1|AAK56136.1|  370|Homo sapiens platelet-derived growth
           factor D protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 503 DLYKFFSSDSNQHKVENFQLNTISSYYLGENKIDLPWTEMVKMYNTRRLDVIAKYNVQDC 324
           DL K+F+ +S Q  +EN  L+T    Y G +  D       K+   R  D   +Y+    
Sbjct: 222 DLLKYFNPESWQEDLENMYLDT--PRYRGRSYHD----RKSKVDLDRLNDDAKRYSCTPR 275

Query: 323 MLPIKLFVKLKMADSV-YSQCILHRLCTDDVICNISHLISVAC 198
              + +  +LK+A+ V + +C+L + C  +  C   +  S  C
Sbjct: 276 NYSVNIREELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTC 318


>AF335584-1|AAK38840.1|  370|Homo sapiens platelet-derived growth
           factor D protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 503 DLYKFFSSDSNQHKVENFQLNTISSYYLGENKIDLPWTEMVKMYNTRRLDVIAKYNVQDC 324
           DL K+F+ +S Q  +EN  L+T    Y G +  D       K+   R  D   +Y+    
Sbjct: 222 DLLKYFNPESWQEDLENMYLDT--PRYRGRSYHD----RKSKVDLDRLNDDAKRYSCTPR 275

Query: 323 MLPIKLFVKLKMADSV-YSQCILHRLCTDDVICNISHLISVAC 198
              + +  +LK+A+ V + +C+L + C  +  C   +  S  C
Sbjct: 276 NYSVNIREELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTC 318


>AB033832-1|BAB18903.1|  370|Homo sapiens spinal cord-derived growth
           factor-B protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 503 DLYKFFSSDSNQHKVENFQLNTISSYYLGENKIDLPWTEMVKMYNTRRLDVIAKYNVQDC 324
           DL K+F+ +S Q  +EN  L+T    Y G +  D       K+   R  D   +Y+    
Sbjct: 222 DLLKYFNPESWQEDLENMYLDT--PRYRGRSYHD----RKSKVDLDRLNDDAKRYSCTPR 275

Query: 323 MLPIKLFVKLKMADSV-YSQCILHRLCTDDVICNISHLISVAC 198
              + +  +LK+A+ V + +C+L + C  +  C   +  S  C
Sbjct: 276 NYSVNIREELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTC 318


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,922,264
Number of Sequences: 237096
Number of extensions: 2094556
Number of successful extensions: 3616
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3616
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)