Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5384
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68214-2|CAA92443.1|  352|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z68214-2|CAA92443.1|  352|Caenorhabditis elegans Hypothetical
           protein C10C5.2 protein.
          Length = 352

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
 Frame = -2

Query: 545 NKVDTYYFNYYIHIDLYKFFSSDSNQHKVENFQLNTISSYYLGEN---KIDLPWT----- 390
           + VD+  FN    + LY+  S  S +  +   Q++T   +++G+N   K+D  W      
Sbjct: 35  DSVDSVKFNPKT-LMLYEITSDMSEEKTIVRMQIDTFKMWFIGKNNITKVDKSWNGELVD 93

Query: 389 EMVKMYNTRRLDVIAKYNVQDCMLPIKLFVKLKMADSVYS 270
           E+ ++    R DVI +Y  +  +  I     +K+ D  +S
Sbjct: 94  ELSELKQENRYDVIRRYLTRMSLDGIIQAESIKLDDLSFS 133


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = -2

Query: 467 HKVENFQLNTISSYYLGENKIDLPWTEMVKMYN----TRRLDVIAKYNVQDCMLPIKLFV 300
           +K+ ++ LN++S  +L E K D+    +  +      TRR   +A+Y ++D  LP++L  
Sbjct: 437 YKLRSYTLNSVSYQFLSEQKEDVEHNIIPDLQRGDEQTRRR--LAQYCLKDAYLPLRLLD 494

Query: 299 KL 294
           KL
Sbjct: 495 KL 496


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 292 FNLTNNFIGNMQSCTLYLAITSSRRVLYILTISVQGKSILFSP 420
           F  TNNF   + SC   + IT++  + + + +   G+ +  SP
Sbjct: 5   FMSTNNFCETVDSCRFLINITNNNSMTHTIEMRFNGEHVSGSP 47


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 292 FNLTNNFIGNMQSCTLYLAITSSRRVLYILTISVQGKSILFSP 420
           F  TNNF   + SC   + IT++  + + + +   G+ +  SP
Sbjct: 5   FMSTNNFCETVDSCRFLINITNNNSMTHTIEMRFNGEHVSGSP 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,820,844
Number of Sequences: 27780
Number of extensions: 362935
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)