Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5383
(431 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 1.6
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.0
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 5.0
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 6.6
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 6.6
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 25 6.6
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 24 8.7
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 24 8.7
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 24 8.7
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 24 8.7
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 204 LCLPKFLVRCYCDELKCLVDTWTA 275
LC+ + LV C C C+V +W A
Sbjct: 105 LCVNENLVVCGCSNSSCIVYSWNA 128
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 5.0
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -2
Query: 388 LRAELVGTVLDIVSYVFIQPS--RTYLNKII*TYHFGTLYAVHVSTRHFNSSQ*QRTRNF 215
+R+ L+ ++ +SY+ + + RT+ + ++GTL V S S+ + +
Sbjct: 3 IRSFLLISIFTAISYLVVDGATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSS 62
Query: 214 GKHSIDTAASTSTCHTLQTSTLKS 143
S D+ STS+ TST S
Sbjct: 63 ISTSHDSQPSTSSSSPSSTSTSSS 86
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 5.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 167 CVTRTCGCCSIDAMFTKISSSLLL*RVEMPGGYVDSI-KSSKVICLYN 307
C TC C+ID MF+ I +S P ++ + K SK +C Y+
Sbjct: 183 CKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYS 230
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 120 SRRNNRPKAHDQLNNNEKAKHRSTKRNPKKISY 22
+ ++ KA Q+NN +K H S K + +Y
Sbjct: 267 ANNHHSEKAGTQINNKDKGSHNSAKPVQRSHTY 299
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 114 RNNRPKAHDQLNNNEKAKHRSTKRN 40
RN + K ++NNE H + KRN
Sbjct: 30 RNKKQKKWASVHNNEAQLHSANKRN 54
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 252 ISTRHNNNELEILVNIASILQHPQVRV 172
+STR NNEL IL N ++ Q P+ R+
Sbjct: 119 LSTRFINNELTILENPINLSQ-PKTRI 144
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 338 YSTFTYLSKQNYINISLWN 282
Y+TFT+ K ++ +I WN
Sbjct: 138 YATFTFSDKPSFTSIYRWN 156
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 126 LKSRRNNRPKAHDQLNNNEKAKHRSTKR 43
L+ R +Q++NN HR TKR
Sbjct: 114 LEEIRKRNQSRKNQMSNNSTTYHRETKR 141
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 102 PKAHDQLNNNEKAKHRSTKRNP 37
PK + +N N+ KH S+ NP
Sbjct: 562 PKGYMFVNENQSMKHESSVSNP 583
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = -2
Query: 223 RNFGKHSIDTAASTSTCHTLQTSTLKSLLII 131
+NFG + + T + STC +K + ++
Sbjct: 258 KNFGSNYLATVSRDSTCRVFDLRAMKDVRVL 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,347
Number of Sequences: 5004
Number of extensions: 35138
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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