Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5381
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0010 + 16364037-16364046,16364769-16364858,16366018-163661...    27   6.5  
01_06_1749 - 39636951-39638102                                         27   8.7  

>03_04_0010 +
           16364037-16364046,16364769-16364858,16366018-16366151,
           16367092-16367250,16368191-16368292
          Length = 164

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 439 INDLKLLYKINLKQTKGIRPTGETSKGKQNCY 344
           IND +L YK+N++ TK +     T K K+  Y
Sbjct: 21  INDFQLHYKVNVEGTKNVIDACVTCKVKRLIY 52


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 76  SIVTTAAPPFKPKRITA 26
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,101
Number of Sequences: 37544
Number of extensions: 244264
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)