Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5381
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical p...    27   5.9  
AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical...    27   5.9  
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    27   7.8  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    27   7.8  

>Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical
           protein T21C12.8 protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 376 GETSKGKQNCYFYLIPSIFIFVYLPFKPSLDF 281
           GET  GK+  YFY +   F   +  F   L F
Sbjct: 130 GETQNGKRYVYFYSVGKTFFITFFVFSMFLLF 161


>AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.21 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +1

Query: 214 LSLAKTRERLDRFDSFW--S*IICGSPEKV*KVDKQI*KYSELNKNNNFVFPLMSPPSDG 387
           L++  TRE       FW     IC        +   +  +   +K NN+ + ++S  + G
Sbjct: 240 LTMPMTRELGKMAFLFWLVGTFICMGATHALFITATVKCFGNRHKANNYGYLILSTTTSG 299

Query: 388 FLLFVLSLFYTK 423
            LL  +S FY K
Sbjct: 300 ILLAAISQFYLK 311


>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
           protein T21C9.6 protein.
          Length = 1215

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 179 DELTAHLVLIGHRNPKDIY 123
           DEL   L L GHR PK++Y
Sbjct: 922 DELRRFLELHGHRGPKELY 940


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 158 VLIGHRNPKDIYNVNAVNHLEI*VLRSQYSYNGCPTLQTQTH 33
           V++     K + ++  +NHLE+ + R Q   N  P  Q Q H
Sbjct: 406 VMLSVLEGKRVVSLEYLNHLEMWIARKQDFLNIAPMSQNQNH 447


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 158 VLIGHRNPKDIYNVNAVNHLEI*VLRSQYSYNGCPTLQTQTH 33
           V++     K + ++  +NHLE+ + R Q   N  P  Q Q H
Sbjct: 403 VMLSVLEGKRVVSLEYLNHLEMWIARKQDFLNIAPMSQNQNH 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,075,549
Number of Sequences: 27780
Number of extensions: 221743
Number of successful extensions: 489
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)