Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5381
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 398 NKRNPSDGGDIKGKTKLLFLFNSEYFHICLSTF*TFSGL 282
           +KR P+   +++GK K     NSE F I       F G+
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENFGIFKRALMGFQGV 65


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 225 SETKLRVLAIHFYIVGRAHSPPGVNWSPEP 136
           +E   R   IH YI+    SP   N SP P
Sbjct: 718 AEQLKRTDIIHNYIMRGEASPRSPNASPSP 747


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 402 NKQKESVRRGRHQRENK 352
           NKQ ++ + G  Q +NK
Sbjct: 498 NKQNDNKQNGNRQNDNK 514


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 192 FYIVGRAHSPPGVNWSP 142
           F I  R  SPP  +W P
Sbjct: 407 FLIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,315
Number of Sequences: 438
Number of extensions: 2632
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)