Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5380
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 63 1e-11
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 31 0.069
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 2.6
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 2.6
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 3.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 3.4
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 25 4.5
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 25 4.5
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.5
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 25 4.5
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 25 4.5
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 24 6.0
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 24 6.0
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 24 6.0
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.9
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 24 7.9
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 24 7.9
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 62.9 bits (146), Expect = 1e-11
Identities = 32/85 (37%), Positives = 43/85 (50%)
Frame = +3
Query: 90 RTYSCIHCRAHLASHDELISKSFQGSRGRAYLFNSVVNVGCGMAEERVLLTGLHAVADIY 269
R Y C C+ HLA L+S ++G G A LF V NV + + TG V I+
Sbjct: 12 RCYVCAKCKTHLAFKGHLLSHDYRGKNGPACLFKRVENVIEMEPKTEQMSTGRFIVRHIH 71
Query: 270 CECCKTMLGWKYEHALESSQEIQGG 344
C C T +GWKY + E SQ+ + G
Sbjct: 72 CCRCHTYIGWKYVSSYEPSQKFKDG 96
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 30.7 bits (66), Expect = 0.069
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = +2
Query: 32 TPAVKTP-VKNVPSLPTAGAPHLQLHTLPRAPRQP*RTHLEVVSRQSGARVSV*FSCERR 208
TPA + P +++V P +P Q LP++ P HL + S S +
Sbjct: 263 TPAAQAPLIRSVSEYPANVSPPAQSLQLPKSTSNPADLHLSIASASSHKNIFSGLDVFSN 322
Query: 209 MRYGGGTRLAD--GPPRGRRHILRVLQDNARVEI*ARLGIEP 328
+ +G T L D R R L V+ RLG+EP
Sbjct: 323 VFHGPSTTLRDREHDMRNRSFDHSTLAHYEAVKQ-QRLGVEP 363
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 25.4 bits (53), Expect = 2.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -3
Query: 279 NTRSICRRPRGGPSARRVPPPYRIRR 202
+ +S+ R+P G P+ ++PP + R+
Sbjct: 412 SAKSVSRKPTGAPAIPKLPPKHPSRQ 437
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 2.6
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 28 RNPGRQDPRQERSKPTYRRRTAPTAAYIAARTSPAMTNSSRSRFKAV 168
R P P Q+ SKP T + TSP M N + S F V
Sbjct: 102 RQPNPSIP-QQFSKPINESGTGTMGPAVGELTSPVMKNRAESIFSPV 147
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 32 TPAVKTPVKNVPSLPTAGAPHLQLHTLPRAPRQP*RTH 145
TP P++ + S PT AP + P +P+Q TH
Sbjct: 12 TPTSSIPLRQM-SQPTTSAPSNSASSTPYSPQQVPLTH 48
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 3.4
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 217 WRRNASC*RASTRSPTYTASVAR--QCSGGNMSTPWNRAKKYKE 342
W R S AS P +A + NMS P+ +AK YKE
Sbjct: 37 WLRTRSYALASGLHPLRKQKLAHFEDLANANMSDPYMQAKLYKE 80
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 4.5
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = +1
Query: 58 ERSKPTYRRRTAPTAAYIAARTSPAMTNSSRSRFKAVGGARICLIQL*TSD 210
+ S T+R R A A SP + NS AV ARI + D
Sbjct: 482 QHSSNTFRLRVTTVARAFADGGSPLIVNSFDQEAAAVAMARIAAFKAEVDD 532
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = -2
Query: 325 LDSKACSYFHPSIVLQHSQYMSA---TAWRPVS 236
L+ K C+Y +PSI+L ++ ++A ++ RP+S
Sbjct: 314 LERKMCNYHNPSILLIKAKKINANHKSSSRPIS 346
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 24.6 bits (51), Expect = 4.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 340 PCISWLDSKACSYFHPSIVLQHSQYMSATAWRPVSKTRSSAIPHPTF 200
PC++ AC + HP+ S+ M+ WRP SKT +++ +F
Sbjct: 258 PCLN----PACRFIHPT----KSRNMT---WRPPSKTEETSLSERSF 293
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 4.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 52 RQERSKPTYRRRTAPTAAYIAARTSPAMTNSSRSRFKAVGGARICLIQ 195
R+E K T R A TAA +A R + A R ++GG C+I+
Sbjct: 198 REEVDKTTVRCPHAATAAKMAERITRA-----RDNHDSIGGTVTCVIR 240
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 84 AHRTYSCIHCRAHLASHDELISK 152
A R Y +HC L D+L++K
Sbjct: 186 AERDYKVVHCHPPLPHVDDLVNK 208
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 141 VRHGWRGARGNVCSCRC 91
VR GWR R C C
Sbjct: 105 VRGGWRATRNGAIGCAC 121
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 17 RSGGGTPAVKTPVKNVPSLPTAGAPHLQLHTLPRAP 124
+ G KTPV +VPS P P TLP P
Sbjct: 518 KGGNWNRIAKTPVSSVPSSPV--QPTSYNRTLPPMP 551
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 70 PTYRRRTAPTAAYIAARTSPAMTNSSRS 153
P+Y R + ++A AR++P T SRS
Sbjct: 197 PSYVRSNSRSSARSTARSAPRSTQRSRS 224
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 7.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -2
Query: 298 HPSIVLQHSQYMSATAWRPVSKTRSSAIP----HPTFTTELNRYARPRLP*NDFEMSSSW 131
+P ++++HS Y+S + P S +R A P H + L RP + +S SW
Sbjct: 329 NPHLLVRHSIYVSIHSREPSSLSRKLAPPFLRTHKAKSNSLFSMKRPSS--SSSSLSGSW 386
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 23.8 bits (49), Expect = 7.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 10 RGEKRRRNPGRQDPRQERSKPTYRRRTAPTAAYIAARTSPAMTNS 144
R + R+P + R+E P Y + +AA A+ S A T S
Sbjct: 289 RRDAYSRSPSPRRDREENRSPAYEGSKSYSAAPEASMESSAPTES 333
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 88 TAPTAAYIAARTSPAMTNSSRSRF 159
T PT++ + T+P+++N+++S F
Sbjct: 419 TLPTSSKMITTTTPSVSNNTQSSF 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,205
Number of Sequences: 5004
Number of extensions: 27941
Number of successful extensions: 95
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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