Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5380
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   7.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   9.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 244 ASTRSPTYTASVARQCS 294
           AS RSP  + S A QC+
Sbjct: 736 ASPRSPNASPSPAEQCA 752


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +3

Query: 78  PPAHRTYSCIHCRAHLASHDELISKS 155
           PP HR         HL  H  L  +S
Sbjct: 61  PPEHRDLPIYQSHHHLHHHQVLYQQS 86


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -1

Query: 350 NLPSLYFLARFQGVLIFPPEHCLATLAVYVG 258
           +LP + +       L+    +C+ATL  + G
Sbjct: 297 DLPKVRYATALDWFLLMSFGYCIATLLEFAG 327


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 349 TCPPCISWLDSKAC 308
           TCP  +SW  + +C
Sbjct: 245 TCPIKVSWRGNYSC 258


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 349 TCPPCISWLDSKAC 308
           TCP  +SW  + +C
Sbjct: 296 TCPIKVSWRGNYSC 309


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 349 TCPPCISWLDSKAC 308
           TCP  +SW  + +C
Sbjct: 245 TCPIKVSWRGNYSC 258


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +3

Query: 243 GLHAVADIYCECCKTMLG 296
           G H V    C CC  + G
Sbjct: 4   GRHVVMSCCCWCCDNLGG 21


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 318 PRRAHISTRALSCNTRSICRRPRGGPSARRVPPPYRIRRSQ 196
           PRRA +    +   +  IC  P  G   +R  P Y +  +Q
Sbjct: 179 PRRARLLVATVWILSFVICFPPLVGWKDKRSHPAYNMTFAQ 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,422
Number of Sequences: 438
Number of extensions: 2214
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)