Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5379
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989...    28   4.6  
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572...    28   4.6  
11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496           27   8.0  
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283...    27   8.0  

>10_06_0035 -
           9896289-9896390,9897394-9897503,9897587-9897715,
           9898734-9898800,9898888-9898970,9899878-9899959,
           9900049-9900125,9900206-9900289,9900368-9900437,
           9900580-9900668,9900921-9901613,9902833-9903142
          Length = 631

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -3

Query: 142 LTII*NVIVHN-----KLKKNTILKFIM*GKYNKKYTNLCISKKLNENKC 8
           +TI+  ++V+N     KL++  +LK I  G       N+C+S ++  N+C
Sbjct: 373 VTILPTLVVNNRQYRGKLERKAVLKAICAGFEETTEPNVCLSDEMETNEC 422


>07_03_1693 -
           28756331-28756435,28756558-28756664,28757114-28757245,
           28757412-28757478,28757553-28757635,28757824-28757905,
           28763101-28763177,28763278-28763361,28763443-28763512,
           28763625-28763713,28763801-28764487,28765700-28765997
          Length = 626

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
 Frame = -3

Query: 142 LTII*NVIVHNK-----LKKNTILKFIM*GKYNKKYTNLCISKKLNENKC 8
           +TI+  ++V+NK     L+K+ +LK +  G       ++C+S+++  N+C
Sbjct: 367 VTILPTLVVNNKQYRGKLEKSAVLKAVCSGFEETTEPDVCLSQEIQTNEC 416


>11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496
          Length = 589

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 212 VNYMLSISKQNLFDIDVHLLTIGAYHYLKCD 120
           V  +L I+++N  DIDV L    A HY K D
Sbjct: 320 VRILLQIARRNSLDIDVDLALGFAAHYGKLD 350


>04_04_1572 -
           34527730-34527859,34528077-34528136,34528253-34528375,
           34528506-34528960,34529343-34529876,34530638-34531501
          Length = 721

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 6   EHLFSLSFFDIHKLVYFLLYFPYMMNFKMVFFLSLLCTITF*IMVST 146
           EH+ ++  F + ++ +FL +  Y++N   +F   L  T+T  I V T
Sbjct: 276 EHMAAMGVFFLLQVFFFLDWVKYLLNDAKLFKSFLRITLTCVITVGT 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,958,849
Number of Sequences: 37544
Number of extensions: 225850
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)