Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5379
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.9  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 534 EVQSRENVRIVEKQQSECI 478
           E+ +R+N+ I  K  SECI
Sbjct: 101 EMANRKNISIDVKMLSECI 119


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 453 VWFCSTITICILIAVSQQF*HFLGFV 530
           +W C    + ILI +  QF    GF+
Sbjct: 375 IWSCLFFFMLILIGLDSQFCTVEGFI 400


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 453 VWFCSTITICILIAVSQQF*HFLGFV 530
           +W C    + ILI +  QF    GF+
Sbjct: 428 IWSCLFFFMLILIGLDSQFCTVEGFI 453


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 64  YNKKYTNLCISKK 26
           YNK YT  C ++K
Sbjct: 446 YNKNYTKFCSTEK 458



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -1

Query: 363 RKSFLKYSNISVVCSRCLFIMIMLS 289
           R SF+   +  ++CS  +F+ I+++
Sbjct: 759 RPSFISPRSQLIICSGLVFVQILIN 783


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,744
Number of Sequences: 438
Number of extensions: 3538
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)