Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5378
         (571 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54XT0 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q4N204 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_A1A9I9 Cluster: Putative uncharacterized protein; n=2; ...    32   8.2  
UniRef50_A7I817 Cluster: Signal transduction histidine kinase; n...    32   8.2  

>UniRef50_Q54XT0 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 636

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -1

Query: 196 IAEIDLISTILQYFSR**SYESAQELVHREY-INQFQLYNITLTAYVKHIIDSTIFSTNY 20
           + E+  ISTI QY+ R     S ++++  ++ I+     N TLT Y++++ D  +FS  Y
Sbjct: 449 LLELIKISTIKQYYHRFSFKGSGKKIIEFKFSISIPTTNNTTLTLYIEYLSDLFLFSIKY 508

Query: 19  K 17
           K
Sbjct: 509 K 509


>UniRef50_Q4N204 Cluster: Putative uncharacterized protein; n=1;
            Theileria parva|Rep: Putative uncharacterized protein -
            Theileria parva
          Length = 1382

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = +3

Query: 303  DFCFYS*YLALILMFYSVYSF*KSKFQRASEGIIIYFSNTTFTVLSEGAKSRVPECGEGP 482
            DF F++  L LIL +Y+V S   ++++          ++TT T+++ G KS V    +GP
Sbjct: 1016 DFWFHN--LCLILHYYTVQSRNGARYKNNCTNNFTTVNSTTNTIVNSGVKSSV-NSTDGP 1072

Query: 483  *CFI 494
             C +
Sbjct: 1073 ECIV 1076


>UniRef50_A1A9I9 Cluster: Putative uncharacterized protein; n=2;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli O1:K1 / APEC
          Length = 102

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 311 TKIQSVNFIAFERFSVIF*WRNIFFFEFYYYASLR 207
           +K  +VN  A  +F   F  RN+F F+FY+ ASLR
Sbjct: 9   SKNLTVNIGAIAQFFTWFKVRNVFSFQFYFIASLR 43


>UniRef50_A7I817 Cluster: Signal transduction histidine kinase; n=1;
           Candidatus Methanoregula boonei 6A8|Rep: Signal
           transduction histidine kinase - Methanoregula boonei
           (strain 6A8)
          Length = 524

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 121 LVHREYINQFQLYNITLTAYVKHIIDSTIFSTNYK 17
           L+H    N   L NI L AY++ +IDS I++   K
Sbjct: 370 LIHERLYNSDDLINIPLEAYIRDLIDSLIYTYRSK 404


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,444,513
Number of Sequences: 1657284
Number of extensions: 9567557
Number of successful extensions: 19114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19110
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)