Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5378
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    26   3.4  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   3.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.9  

>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 152 SLIELRERTRTSSPRIYQSISALQH 78
           ++++ + R   +SP+IY+SIS L H
Sbjct: 212 AVLKYKRRGGPTSPKIYESISNLDH 236


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 252 PLKYYTEAFERDKVYTLDFCFYS*YLALILMF 347
           PL+YYT   +  + +  DFC++   L L+ ++
Sbjct: 149 PLRYYTYQRKGYEYFIADFCYWGNILLLVYIW 180


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 372 SKFQRASEGIIIYFSNTTFTVLSE 443
           +KFQ +   II+Y+SN T   LSE
Sbjct: 717 NKFQNSESRIIVYYSNNTL-YLSE 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,816
Number of Sequences: 5004
Number of extensions: 43771
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)