Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5378
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781...    29   3.4  

>06_03_0025 -
           15577231-15577420,15577682-15577813,15578025-15578173,
           15579012-15579071,15593208-15593297,15593604-15593871,
           15594517-15594608,15595355-15595441,15597333-15597440,
           15597709-15597822,15598253-15598420,15599442-15599579,
           15599699-15599908,15600986-15601237,15601965-15602111,
           15603327-15603443
          Length = 773

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 133 SAQELVHREYINQFQLYNITLTAYVKHIIDST 38
           S ++L+   +I +++   + L AYVK I+D T
Sbjct: 379 SCEQLLSHPFIKRYENTTVDLVAYVKSIVDPT 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,836
Number of Sequences: 37544
Number of extensions: 245861
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)