Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5378
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    29   2.4  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    29   2.4  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      29   2.4  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
            guidance protein 3,isoform b protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 547  YHYVQARGGRGRALTGHYIK--H*GPSPHSGT 458
            YHY Q  GG G A++  Y    H  PSP++ T
Sbjct: 983  YHYAQLTGGPGNAMSTFYGNQYHDDPSPYATT 1014


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
            guidance protein 3,isoform a protein.
          Length = 1269

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 547  YHYVQARGGRGRALTGHYIK--H*GPSPHSGT 458
            YHY Q  GG G A++  Y    H  PSP++ T
Sbjct: 983  YHYAQLTGGPGNAMSTFYGNQYHDDPSPYATT 1014


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 547  YHYVQARGGRGRALTGHYIK--H*GPSPHSGT 458
            YHY Q  GG G A++  Y    H  PSP++ T
Sbjct: 983  YHYAQLTGGPGNAMSTFYGNQYHDDPSPYATT 1014


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 363 NYIHCRTLK*ELSINCRNKNPECKLYRVRT 274
           NYIH RTL    +I+ R +N +C++ R+ +
Sbjct: 440 NYIHVRTLSLPFTISTR-RNQDCQVQRMNS 468


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 363 NYIHCRTLK*ELSINCRNKNPECKLYRVRT 274
           NYIH RTL    +I+ R +N +C++ R+ +
Sbjct: 506 NYIHVRTLSLPFTISTR-RNQDCQVQRMNS 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,124,293
Number of Sequences: 27780
Number of extensions: 237890
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)