Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5378
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.40 
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   3.7  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   3.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   3.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   3.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   3.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   3.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   3.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   3.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 296 VNFIAFERFSVIF*WRNIFFFEFYYY 219
           + +I F+RF  I    N+  F++Y+Y
Sbjct: 7   IKYINFDRFFFIEGMTNVLDFDYYFY 32


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 71  RERERSKEPKIVSSLSNNYNYS 92


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 71  RERERSKEPKIISSLSNNYNYS 92


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 71  RERERSKEPKIISSLSNNYNYS 92


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 71  RERERSKEPKIISSLSNNYNYS 92


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 71  RERERSKEPKIISSLSNNYNYS 92


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 71  RERERSKEPKIISSLSNNYNYS 92


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 71  RERERSKEPKIISSLSNNYNYS 92


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 71  RERERSKEPKIISSLSNNYNYS 92


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 RERTRTSSPRIYQSISALQHYT 72
           RER R+  P+I  S+S   +Y+
Sbjct: 293 RERERSKEPKIISSLSNSCNYS 314


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 177 IRSISAIHITP*GSVIIKLEKKYVPPLKYYTEAFERDKVYTLDFCFY 317
           I   +AI  T   S ++K+  +        +E FE+ ++  L  C+Y
Sbjct: 279 IVGFTAISSTYSASELVKILNELFARFDQLSERFEQLRIKILGDCYY 325


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 372 SKFQRASEGIIIYFSNTTFTVL 437
           +KF+  SE + I+ S TT+ +L
Sbjct: 615 NKFESLSEPLRIHVSPTTYILL 636


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,750
Number of Sequences: 438
Number of extensions: 3210
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)