Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5377
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U59212-1|AAB09671.1|  428|Caenorhabditis elegans transmembrane p...    31   0.63 
U39677-5|AAN71843.1|  383|Caenorhabditis elegans Innexin protein...    31   0.63 
U39677-4|AAN71842.1|  428|Caenorhabditis elegans Innexin protein...    31   0.63 
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    29   2.5  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z50755-1|CAB61030.2|  386|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U93195-1|AAB51534.1|  386|Caenorhabditis elegans UNC-9 protein.        27   5.8  
U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.        27   5.8  

>U59212-1|AAB09671.1|  428|Caenorhabditis elegans transmembrane
           protein protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = -3

Query: 229 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGILSNLCFQYLQ 92
           NV ++ + C      F+  I+L+L+FW F+       S FHW+ I+S L  Q+++
Sbjct: 256 NVHHHTVQCVLMINMFNEKIFLFLWFWYFMVAFVSAVSMFHWI-IISFLPGQHMK 309


>U39677-5|AAN71843.1|  383|Caenorhabditis elegans Innexin protein 1,
           isoform b protein.
          Length = 383

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = -3

Query: 229 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGILSNLCFQYLQ 92
           NV ++ + C      F+  I+L+L+FW F+       S FHW+ I+S L  Q+++
Sbjct: 256 NVHHHTVQCVLMINMFNEKIFLFLWFWYFMVAFVSAVSMFHWI-IISFLPGQHMK 309


>U39677-4|AAN71842.1|  428|Caenorhabditis elegans Innexin protein 1,
           isoform a protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = -3

Query: 229 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGILSNLCFQYLQ 92
           NV ++ + C      F+  I+L+L+FW F+       S FHW+ I+S L  Q+++
Sbjct: 256 NVHHHTVQCVLMINMFNEKIFLFLWFWYFMVAFVSAVSMFHWI-IISFLPGQHMK 309


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 448 EKEKREKDEKLGQKKDKDP 504
           +KEKREK E    KKDKDP
Sbjct: 535 KKEKREKKEGKKGKKDKDP 553


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -3

Query: 241 VLYSNV--SNYLISCDYFWFSHSIYLYLYFWSFL 146
           VL+ N+  SN+ I+  Y  FS +I LYL+F  FL
Sbjct: 65  VLFLNILHSNWSINILYSVFSLTIVLYLFFCKFL 98


>Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical
           protein F13G3.8 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -3

Query: 229 NVSNYLISC--DYFWFSHSIYLYLYFWSFLSTFHWLGILSNLCFQYLQLSTLFE 74
           N+  Y I C      F+  I+L+LY W  L  F  L     LC+       L E
Sbjct: 258 NLQRYSIQCVLTLNMFNEKIFLFLYIWFLLVFFVTLFDSIFLCYNMFSSHKLVE 311


>Z50755-1|CAB61030.2|  386|Caenorhabditis elegans Hypothetical
           protein R12H7.1 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
 Frame = -3

Query: 229 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGI 122
           NV  + + C      F+  I+L+L+FW FL       S F+W+ I
Sbjct: 263 NVHRHTVQCVLMINMFNEKIFLFLWFWYFLLAGATLCSLFYWIYI 307


>U93195-1|AAB51534.1|  386|Caenorhabditis elegans UNC-9 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
 Frame = -3

Query: 229 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGI 122
           NV  + + C      F+  I+L+L+FW FL       S F+W+ I
Sbjct: 263 NVHRHTVQCVLMINMFNEKIFLFLWFWYFLLAGATLCSLFYWIYI 307


>U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -3

Query: 229 NVSNYLISC--DYFWFSHSIYLYLYFWSFLSTFHWLGILSNLCFQYLQLSTLFE 74
           N+  Y I C      F+  I+L+LY W  L  F  L     LC+       L E
Sbjct: 258 NLQRYSIQCVLTLNMFNEKIFLFLYIWFLLVFFVTLFDSIFLCYNMFSSHKLVE 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.306    0.129    0.332 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,399,613
Number of Sequences: 27780
Number of extensions: 77392
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)