Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5278
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   2.9  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   2.9  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    26   2.9  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    24   8.8  

>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 69  VHPRIASYIPKDLEFLSLANDLFNLI 146
           +HP +  YI  DL+ L     L NL+
Sbjct: 306 LHPNVEKYISLDLQILGFFAKLINLV 331


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 69  VHPRIASYIPKDLEFLSLANDLFNLIVTTGSETDHKCLSCIFVLQL*CLIYD 224
           V P   S +PK L+ L   N  + L +T   E+    +     + + CL+YD
Sbjct: 605 VEPHNPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYD 656


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 72  HPRIASYIPKDLEFLSLANDLFNLIVTTGSETD 170
           HP++  +I    +FL    + F++I+T  S+ D
Sbjct: 141 HPKVKVHIGDGFKFLQDYQNTFDVIITDSSDPD 173


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60  SSTVHPRIASYIPKDLEFLSLANDLFNLIVTTGS-ETDHKCLSCIFVLQ 203
           SSTV PRI   +PKD    +  N     + TT S + D+K L  +  +Q
Sbjct: 240 SSTVGPRILPSLPKD---TTEDNPALERVETTASLDMDYKPLEPLAPIQ 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,397
Number of Sequences: 5004
Number of extensions: 28834
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)