Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5278
         (434 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03734-1|CAA27371.1|  930|Drosophila melanogaster protein ( D. m...    28   4.8  
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei...    28   4.8  
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ...    28   4.8  
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ...    28   4.8  
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ...    28   4.8  
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ...    28   4.8  
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr...    28   4.8  
AY094962-1|AAM11315.1| 1083|Drosophila melanogaster SD04240p pro...    27   8.3  
AE014298-1214|AAF46397.3| 1644|Drosophila melanogaster CG12737-P...    27   8.3  
AE014298-1213|AAF46398.3| 1671|Drosophila melanogaster CG12737-P...    27   8.3  

>X03734-1|CAA27371.1|  930|Drosophila melanogaster protein ( D.
           melanogaster retrotransposongypsy gene fragment for
           reverse transcriptase-like enzyme.).
          Length = 930

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 19  CTAEIRSILTLATFHRQFIRELQVISQRI 105
           C  ++RS L LA+++R FI++   I++ I
Sbjct: 393 CVYKVRSFLGLASYYRVFIKDFAAIARPI 421


>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
           protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 19  CTAEIRSILTLATFHRQFIRELQVISQRI 105
           C  ++RS L LA+++R FI++   I++ I
Sbjct: 388 CVYKVRSFLGLASYYRVFIKDFAAIARPI 416


>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
           protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 19  CTAEIRSILTLATFHRQFIRELQVISQRI 105
           C  ++RS L LA+++R FI++   I++ I
Sbjct: 423 CVYKVRSFLGLASYYRVFIKDFAAIARPI 451


>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
           protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 19  CTAEIRSILTLATFHRQFIRELQVISQRI 105
           C  ++RS L LA+++R FI++   I++ I
Sbjct: 423 CVYKVRSFLGLASYYRVFIKDFAAIARPI 451


>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
           protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 19  CTAEIRSILTLATFHRQFIRELQVISQRI 105
           C  ++RS L LA+++R FI++   I++ I
Sbjct: 388 CVYKVRSFLGLASYYRVFIKDFAAIARPI 416


>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
           protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 19  CTAEIRSILTLATFHRQFIRELQVISQRI 105
           C  ++RS L LA+++R FI++   I++ I
Sbjct: 388 CVYKVRSFLGLASYYRVFIKDFAAIARPI 416


>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
           protein.
          Length = 1463

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 19  CTAEIRSILTLATFHRQFIRELQVISQRI 105
           C  ++RS L LA+++R FI++   I++ I
Sbjct: 841 CVYKVRSFLGLASYYRVFIKDFAAIARPI 869


>AY094962-1|AAM11315.1| 1083|Drosophila melanogaster SD04240p protein.
          Length = 1083

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 1    DIVD*VCTAEIRSILTLATFHRQFIRELQVISQRI*NFY 117
            DI+    TA  RS + LATFHR++      +++R  N Y
Sbjct: 1020 DILFLALTAIGRSNVDLATFHREYAAVFDKLTERECNMY 1058


>AE014298-1214|AAF46397.3| 1644|Drosophila melanogaster CG12737-PB,
            isoform B protein.
          Length = 1644

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 1    DIVD*VCTAEIRSILTLATFHRQFIRELQVISQRI*NFY 117
            DI+    TA  RS + LATFHR++      +++R  N Y
Sbjct: 1581 DILFLALTAIGRSNVDLATFHREYAAVFDKLTERECNMY 1619


>AE014298-1213|AAF46398.3| 1671|Drosophila melanogaster CG12737-PA,
            isoform A protein.
          Length = 1671

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 1    DIVD*VCTAEIRSILTLATFHRQFIRELQVISQRI*NFY 117
            DI+    TA  RS + LATFHR++      +++R  N Y
Sbjct: 1608 DILFLALTAIGRSNVDLATFHREYAAVFDKLTERECNMY 1646


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,397,441
Number of Sequences: 53049
Number of extensions: 290989
Number of successful extensions: 559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)