Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5278
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81497-3|CAB04081.2|  593|Caenorhabditis elegans Hypothetical pr...    31   0.36 
Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,...    27   7.8  

>Z81497-3|CAB04081.2|  593|Caenorhabditis elegans Hypothetical
           protein F10C2.6 protein.
          Length = 593

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 36  FNFDTGNISSTVHPRIASYIPKDLEFLSLANDLFNLIVTTGSETD 170
           F+F+ G + ST HP  A  + KD++ L  +ND+  L+  TG   D
Sbjct: 437 FSFEEGQLVSTHHPFTAP-LEKDIDIL-YSNDIDKLLQITGQHYD 479


>Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical
           protein F28B1.2 protein.
          Length = 973

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -3

Query: 117 IEILNPLGYNLQFSDELSMKCCQCQN*TYFSSAHSIHNV 1
           I+++NP G  +++S+ + M+ C+C N   F+  +  +NV
Sbjct: 294 IQLINPAGACVKYSEPVEMQKCKC-NVKLFNKKNVQNNV 331


>AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,
           light intermediateprotein 1 protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +3

Query: 63  STVHPRIASYIPKDLEFLSL----ANDLFNLIVTTGSETDHKCLS 185
           S  HPRI++ +  DLEF S+     ++  + I + G++TD + +S
Sbjct: 93  SASHPRISNLLSVDLEFSSVQTACTDNKDSAIYSKGTQTDDERIS 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,204,871
Number of Sequences: 27780
Number of extensions: 158936
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)