Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5277
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550 29 3.2
03_05_0037 + 20113866-20114006,20114389-20114415,20116511-201165... 29 3.2
11_01_0631 - 5063622-5063635,5065050-5065203,5065280-5065441,506... 28 7.3
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492 28 7.3
11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598... 27 9.7
08_02_1162 - 24811327-24812162,24815969-24816028,24816526-248167... 27 9.7
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 27 9.7
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 27 9.7
05_01_0169 - 1170614-1172098 27 9.7
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444... 27 9.7
03_05_0146 - 21260967-21261055,21261464-21261568,21261851-212619... 27 9.7
>07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550
Length = 461
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 342 GTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKKKAS 458
G+D AV+GAG A D +S D AA + KK A+
Sbjct: 391 GSDKSAAVSGAGAAASDADSSGADSGAAAAAAAKKPMAA 429
>03_05_0037 +
20113866-20114006,20114389-20114415,20116511-20116582,
20118237-20118365,20118557-20118589
Length = 133
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 KKDPTSCLKNKFFSYVDKYIGQKDSFAVTDGVKIYKSADVIQ-----TGAPRSLDPLSRL 299
KK LKN F D Y+ Q D+ ++DG+ +Y++AD G RS PL
Sbjct: 54 KKQVRKTLKNFFLGRNDLYLLQVDTSKLSDGL-VYEAADDSNYFPHFYGPGRSFAPLQLD 112
Query: 300 RTYLETHSLSVEVK 341
E + +EV+
Sbjct: 113 AVIKEAEKIVLEVE 126
>11_01_0631 -
5063622-5063635,5065050-5065203,5065280-5065441,
5065657-5066633,5067502-5067523
Length = 442
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 356 GCCDWCRKSSSRYCDF 403
GC D+CR + S YC F
Sbjct: 283 GCSDFCRNAGSGYCGF 298
>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
Length = 790
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 309 LETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKK 449
LET L EV+ +L A +G L+D++ V+DD E+ KK
Sbjct: 399 LETKKLETEVESELVLAARSG----LEDSIEHLVEDDKREKDMLSKK 441
>11_01_0724 +
5981680-5981748,5982301-5982397,5982496-5982593,
5983535-5983690,5983986-5984063,5984135-5984266,
5984856-5984936,5985442-5985510,5985597-5985686,
5986001-5986145,5986218-5986276,5986384-5986479,
5986561-5986628,5986704-5986803,5986910-5986966,
5987179-5987337
Length = 517
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 234 IYKSADVIQTGAPRSLDPLSRLRTYLETHSL 326
++ S D+I RS + + LR++L++H L
Sbjct: 217 LHNSVDIISLSHTRSAEDVRELRSFLQSHGL 247
>08_02_1162 -
24811327-24812162,24815969-24816028,24816526-24816725,
24817436-24817657,24817989-24818312,24818852-24818988
Length = 592
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +3
Query: 267 APRSLDPLSRLRTYLETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKK 446
APR +D L H+ ++ TD+L +D +T FV DAA S +
Sbjct: 366 APRHVDLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDAAFASLARS 425
Query: 447 KKAS 458
A+
Sbjct: 426 ATAN 429
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 81 ALPAQDTSYSENDLDDCLKKDP--TSCLKNKFFSYVDKYIGQKDSFAVTDGVKIYKSADV 254
A+ D +E+D++D K+ + C Y Y+ Q + V + + AD+
Sbjct: 69 AIKVIDLEEAEDDIEDIQKEISVLSQCRCPYITDYYGSYLHQTKLWIVMEYMAGGSVADL 128
Query: 255 IQTGAPRSLDPLS 293
+QTG P LD LS
Sbjct: 129 LQTGPP--LDELS 139
>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 232 RSTSQLMSYRREHPDLSTRFQD 297
R TS LM+Y +EHPD+ D
Sbjct: 1398 RKTSPLMNYVQEHPDIVVHLVD 1419
>05_01_0169 - 1170614-1172098
Length = 494
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 375 GRALQDTVTSFVDDDAAE 428
GRA ++T+T VDDDA+E
Sbjct: 297 GRATKNTITGNVDDDASE 314
>03_05_0902 +
28643395-28643708,28643830-28643921,28644342-28644443,
28645135-28645185,28645267-28645328,28645664-28645754,
28645911-28645975,28646053-28646247,28646346-28646465,
28646630-28646700,28646839-28647064,28647474-28647524,
28647629-28647857,28648140-28648279,28648527-28648652
Length = 644
Score = 27.5 bits (58), Expect = 9.7
Identities = 27/102 (26%), Positives = 46/102 (45%)
Frame = +3
Query: 156 LKNKFFSYVDKYIGQKDSFAVTDGVKIYKSADVIQTGAPRSLDPLSRLRTYLETHSLSVE 335
++N SYVDK A++ + ++D I+ R +DP S RT+ L +
Sbjct: 197 IENMVRSYVDK--PNSIILAISPANQDIATSDAIKLA--RDVDP-SGDRTFGVLTKLDLM 251
Query: 336 VKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKKKASK 461
KGT+ +D + G LQ V+ A+ +R A++
Sbjct: 252 DKGTNAVDVLEGRQYRLQHPWVGIVNRSQADINRNVDMLAAR 293
>03_05_0146 -
21260967-21261055,21261464-21261568,21261851-21261936,
21262144-21262253,21262370-21262474
Length = 164
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Frame = +2
Query: 476 NGDYGYEDDGNNASCD----RSYSVNSRQGVTDRKT-GIGLVSDNWFG 604
N DYGY GN+ S R SR G K G L + NW G
Sbjct: 66 NSDYGYSSGGNSCSTSERLARPAVQVSRAGQAPAKACGPNLAARNWLG 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,872
Number of Sequences: 37544
Number of extensions: 316576
Number of successful extensions: 851
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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