Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5277
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   2.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   2.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   2.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.7  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 452 SLKNPWANNGDYGYEDDGNNASCDRSYSVN 541
           SL N   +N +Y Y  + NN +    Y++N
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 452 SLKNPWANNGDYGYEDDGNNASCDRSYSVN 541
           SL N   +N +Y Y  + NN +    Y++N
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 452 SLKNPWANNGDYGYEDDGNNASCDRSYSVN 541
           SL N   +N +Y Y  + NN +    Y++N
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 452 SLKNPWANNGDYGYEDDGNNASCDRSYSVN 541
           SL N   +N +Y Y  + NN +    Y++N
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 107 VRRILGGQSGCSRNQSEDKQRPPH 36
           +RR++      S++ + D+ +PPH
Sbjct: 788 MRRLMSEDKRLSKSVNGDQSQPPH 811


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -3

Query: 228 LHR*QRTNPSALYTCPRMRRTCFSDRM*GLSLSSRRDHFQSTTYLGRAERM 76
           +H  Q    + ++   R+ R    DRM  +    R D   +   + R +RM
Sbjct: 361 MHLPQSNKMNRMHRMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRM 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,597
Number of Sequences: 438
Number of extensions: 3251
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)