Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5275
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    29   0.49 
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   1.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   2.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   4.5  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    25   6.0  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   7.9  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   7.9  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   7.9  

>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 114 DKKNIFSSINVKFPALYKIVNNEFLN 37
           DK + +S+ ++ FP L +++ NE+LN
Sbjct: 349 DKISFYSNSSLSFPVLKRMITNEYLN 374


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 407 LHQRPSRTSDELPYRVICDG-GLVASTGVDPY--RSPPAERRP 288
           ++ +P   S +LP +VI DG G ++    +P+   SPP +  P
Sbjct: 201 INDQPFSNSFDLPSQVIADGTGAISDINGNPFPMNSPPLDMEP 243


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 253  TCPRCKQTSSYNNVYHYVGRSQSNRTLLHFTFNF 152
            +CP CK   + NN Y Y+G S+   +   F   F
Sbjct: 1125 SCPMCKTKLNKNNAY-YIGESRDIYSRQEFVTGF 1157


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 462 RSGERGGWKSGQRGG 418
           R G RGG++ G RGG
Sbjct: 175 RGGSRGGFRGGSRGG 189


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 462 RSGERGGWKSGQRGGLG 412
           R G RGG + G RGG G
Sbjct: 32  RGGARGGGRGGARGGRG 48


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 46  FVIYNFIKRGKLDVYRRKNIFFV 114
           F IY+ I+ G ++ Y+R N+F V
Sbjct: 31  FAIYSPIQLGGINFYKRTNLFTV 53


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = -3

Query: 404 HQRPSRTSD-ELPYRVICDGGLVAS--TGVDPYRSPPAERRPPSGLNAIGRITDLPS 243
           H+R +   +   PY +      VA+    ++  RS P E  P +G       TD PS
Sbjct: 5   HKRDTNVRNLSAPYNIPSQSARVAAGNAAINRRRSSPVENSPGNGFPVSEDATDYPS 61


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 283  LGGRLSAGGERYGSTPVLATRPPSH 357
            L G+ S   + YG T  LAT PPSH
Sbjct: 1234 LSGKESESKKNYGVTEKLAT-PPSH 1257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,230
Number of Sequences: 5004
Number of extensions: 40966
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)