Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5275
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0152 - 2260314-2260694 33 0.12
12_01_0374 - 2910752-2911516 30 1.1
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 30 1.1
06_01_0920 + 7098007-7098065,7098538-7099345 29 2.0
05_04_0011 + 17139322-17139451,17139552-17140174 29 2.7
09_04_0375 - 17055024-17055956,17056045-17056296 29 3.5
10_01_0334 - 3680612-3681266,3682253-3682374 28 4.6
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 4.6
>09_01_0152 - 2260314-2260694
Length = 126
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -3
Query: 461 GVESVAGGRADSEAGWGELHQRPSRTSDELPYRVICDGGLVASTGVDPYRS 309
GV GGR G G + Q + TS P R DGG A+ G D +R+
Sbjct: 2 GVGPACGGRRRRRWGLGRVRQTATATSGARPRRADGDGGASAARGDDLWRA 52
>12_01_0374 - 2910752-2911516
Length = 254
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 472 RHHSAIVTKSTSVLSGDSKEPAPAPSP 552
RHH+AI+T V + + PAPAP P
Sbjct: 213 RHHAAILTAFAEVCAQLAAPPAPAPPP 239
>04_04_0751 -
27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 449 VAGGRADSEAGWGELHQRPSRTSDELPYRV--ICDGGLVASTGVDPYRSPPAERRPPS 282
+ GG A + AG LH+ S ELP+ V + G + + G+D PPS
Sbjct: 93 MVGGGAAAAAGVNRLHEMVSEEQGELPHTVVDVLLGTMGGADGLDEVEDKTGTGAPPS 150
>06_01_0920 + 7098007-7098065,7098538-7099345
Length = 288
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 487 IVTKSTSVLSGDSKEPAPAPSPADSGVSE 573
++ T +L ++EP+P PSP SGV E
Sbjct: 131 VLASLTEMLRAKNQEPSPPPSPLLSGVQE 159
>05_04_0011 + 17139322-17139451,17139552-17140174
Length = 250
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -3
Query: 464 SGVESVAGGRADSEAGWGELHQR--PSRTSDELPYRVICDGGLVASTGVDPYRS------ 309
+G + + G+ + G +H + P S VI DG + TG DP +
Sbjct: 114 NGGKVIGDGKRLTPTGPDPVHNKFQPPPPSPPNGGNVIGDGKRLTPTGPDPIHNEFQPPP 173
Query: 308 PPAERRPPSGLNAIG 264
PP PP+G N IG
Sbjct: 174 PPPPPSPPNGANVIG 188
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 362 VICDGGLVASTGVDPYRS--PPAERRPPSGLNAIG 264
VI DG + G DP + PP PP+G N IG
Sbjct: 186 VIGDGKRLTPIGPDPIHNEFPPPPPSPPNGANVIG 220
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 362 LCTEAHQTYVKVVGAVRPSPPRCPLFHPPRSPL 460
L TE H+ PSPP P F PP PL
Sbjct: 108 LLTEIHRRKTSSASTASPSPP--PFFAPPHFPL 138
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -2
Query: 450 RGGWKSGQRGGLGRTAPTTFTYV**ASVQSHMRRWPCSEHRSGSISLSARRETPA 286
RGG + G+RG G +A +S RR R G S S+RR P+
Sbjct: 159 RGGSREGRRGARGASAAAAVDGCCGGHGRSRRRRGQSRRARGGRKSSSSRRSFPS 213
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 395 VVGAVRPSPPRCPLFHPPRSP 457
+V + PSPPR L PPRSP
Sbjct: 71 MVASKSPSPPRRRLLPPPRSP 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,355
Number of Sequences: 37544
Number of extensions: 309990
Number of successful extensions: 1587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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