Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5274
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46668-2|AAA93345.2| 333|Caenorhabditis elegans Hypothetical pr... 91 9e-19
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 36 0.020
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 35 0.046
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 35 0.046
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 33 0.14
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 33 0.14
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 33 0.14
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 32 0.33
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 32 0.33
Z83238-1|CAB05792.1| 339|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41029-2|AAL65785.1| 192|Caenorhabditis elegans Hypothetical pr... 29 3.0
>U46668-2|AAA93345.2| 333|Caenorhabditis elegans Hypothetical
protein F38E9.5 protein.
Length = 333
Score = 90.6 bits (215), Expect = 9e-19
Identities = 41/109 (37%), Positives = 67/109 (61%)
Frame = +3
Query: 21 RDSKLRVLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPCYILYRFDSKNSLG 200
+ +KLR++K+ + NE++T F+ W D+ +P ++ +PC+IL+R ++
Sbjct: 21 KQAKLRLIKIVVNNEEMTPNYEFAGTANWRDDWRACLPDCVDAYEPCFILFRLNTIT--- 77
Query: 201 HEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKKSL 347
EW+L+++ D APVR+KML A+T AT K EFG +I+ E H T K L
Sbjct: 78 -EWVLITFVDDRAPVREKMLLAATCATFKSEFGQCYIEHEKHVTDLKDL 125
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Frame = +2
Query: 338 EVSLKGYKAHLSGVSAPAPLTDREEALKELQESEHNTNYGVDARQSTMGGVAFPITEAAK 517
+++L ++A L + P+++ E +EL ++ A M GVAFP+ A+
Sbjct: 124 DLTLNAFEAWLKAKTELGPMSEVE---RELHNAQQERAAIAHAGPQHMKGVAFPVDRNAE 180
Query: 518 QGIVDLQRGSYNYLQFRIDLEEEKINLSKASKIL-LEELPLQVPNDQARYHLYIF 679
+ + L +++Q +D E I L + L +L +VP D+ RY Y F
Sbjct: 181 EALRQLASQKLSFVQLSVDTLNEAIKLEGTLESLEPSQLASKVPRDKPRYTFYNF 235
Score = 30.7 bits (66), Expect = 1.00
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Frame = +3
Query: 3 EYISKCRDSKLRVLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPCYILYRFD 182
E + + KL ++++++ T+ + +GT E + S + D+P Y Y FD
Sbjct: 181 EALRQLASQKLSFVQLSVD----TLNEAIKLEGTLESLEPSQLASKVPRDKPRYTFYNFD 236
Query: 183 -SKNSLGHEWLLLSWS-PDS-APVRQKMLYASTK 275
+ + + L +S P S + ++++MLY+S K
Sbjct: 237 HTWEGVPQQCTLFIYSLPSSGSSIKERMLYSSCK 270
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 171 YRFDSKNSLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFG 299
++ ++ + H+ LL + PD+APVR++MLYAS+ LK G
Sbjct: 141 FQVSDESEMSHKELLNN-CPDNAPVRRRMLYASSVRALKASLG 182
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 210 LLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHI 311
+ L PD A +++KM+YAS+ A +K G+ I
Sbjct: 105 IFLQICPDGASIKKKMVYASSAAAIKTSLGTGKI 138
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 35.1 bits (77), Expect = 0.046
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 210 LLLSWSPDSAPVRQKMLYASTKATLKQEFG 299
+ + + PD+APVR++MLYAS+ LK G
Sbjct: 93 IFVQYCPDNAPVRRRMLYASSVRALKASLG 122
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 35.1 bits (77), Expect = 0.046
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 210 LLLSWSPDSAPVRQKMLYASTKATLKQEFG 299
+ + + PD+APVR++MLYAS+ LK G
Sbjct: 93 IFVQYCPDNAPVRRRMLYASSVRALKASLG 122
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 332 SCMHLILNMGGTKFLFQCGFR*SI*HFL-PNGCTIWG 225
SC H++ M +F + C S H+L P GCT WG
Sbjct: 272 SCNHMVCTMCNAEFCWLCLKEISDLHYLSPTGCTFWG 308
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 332 SCMHLILNMGGTKFLFQCGFR*SI*HFL-PNGCTIWG 225
SC H++ M +F + C S H+L P GCT WG
Sbjct: 272 SCNHMVCTMCNAEFCWLCLKEISDLHYLSPTGCTFWG 308
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 332 SCMHLILNMGGTKFLFQCGFR*SI*HFL-PNGCTIWG 225
SC H++ M +F + C S H+L P GCT WG
Sbjct: 272 SCNHMVCTMCNAEFCWLCLKEISDLHYLSPTGCTFWG 308
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 210 LLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHI 311
+ L PD A +++KM+YAS+ A +K G+ I
Sbjct: 105 IFLQICPDGASIKKKMVYASSAAAIKTSLGTGKI 138
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 210 LLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHI 311
+ L PD A +++KM+YAS+ A +K G+ I
Sbjct: 105 IFLQICPDGASIKKKMVYASSAAAIKTSLGTGKI 138
>Z83238-1|CAB05792.1| 339|Caenorhabditis elegans Hypothetical
protein T08G3.1 protein.
Length = 339
Score = 29.9 bits (64), Expect = 1.7
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Frame = -1
Query: 568 SKL*IIIGTSLEINYSLLSGFCYRKGYTTHC*LPGINPIVGVMFAFLQLFQGFLSIREGG 389
S+ + TS ++ L+ FC R+ + L + VGV+FA L+ FL G
Sbjct: 11 SQFGFFVTTSSQLTVIFLTVFCVRRDLGAYKHLVVLFSTVGVLFALLE----FLLYPASG 66
Query: 388 GSTHSA------QMRLVAFQRDFLTV-ACISSLIWAEPNSCFNVAFVEAY-SIFC 248
+HSA R ++FLTV + ++ S V F+ Y ++FC
Sbjct: 67 LHSHSAAYIVYINNRPFDASKEFLTVLLAVYCSLYCAAISLLAVQFIYRYIAVFC 121
>U41029-2|AAL65785.1| 192|Caenorhabditis elegans Hypothetical
protein F47G3.2 protein.
Length = 192
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 70 SCSFSIVTFKTRSLLSRHLL 11
SC+FS + F+T S L+RHLL
Sbjct: 158 SCNFSSMHFRTSSTLNRHLL 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,719
Number of Sequences: 27780
Number of extensions: 329717
Number of successful extensions: 874
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -