Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5274
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   4.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   4.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.2  

>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 151 SSSINDGTYLSKSCSHVPFVEKCLAIVSCSFSIVT 47
           +SS  D TY      +VPF E   ++    F  VT
Sbjct: 49  TSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVT 83


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 151 SSSINDGTYLSKSCSHVPFVEKCLAIVSCSFSIVT 47
           +SS  D TY      +VPF E   ++    F  VT
Sbjct: 51  TSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVT 85


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 527 VDLQRGSYNYLQFRIDLEEEKINLSKASKILLEELPLQ 640
           + L  G  N++   +DLE E +   +A++     LP++
Sbjct: 62  IRLTYGQTNHISLTLDLEYELVENLQANEKPWSTLPIE 99


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 527 VDLQRGSYNYLQFRIDLEEEKINLSKASKILLEELPLQ 640
           + L  G  N++   +DLE E +   +A++     LP++
Sbjct: 100 IRLTYGQTNHISLTLDLEYELVENLQANEKPWSTLPIE 137


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 207 IRDQGNFLNQTYIIYNKVDLPQSMMVHIYQNHAPMFL 97
           IR + N   Q+  I N+V+LPQ  ++   Q H+ + L
Sbjct: 166 IRYKWNAGLQSVGISNEVELPQFRVLGHRQRHSTIHL 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,904
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)