Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5273
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220... 48 6e-06
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342... 47 1e-05
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 46 2e-05
11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59... 46 2e-05
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 36 0.031
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 34 0.096
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 33 0.17
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 32 0.29
10_08_0965 + 21915842-21916906 29 2.1
03_06_0485 + 34242121-34243188 29 2.1
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 29 2.1
03_04_0247 - 19331253-19331293,19331438-19331621 29 3.6
04_01_0253 - 3358090-3359052 28 4.8
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 28 6.3
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 6.3
03_06_0241 - 32587492-32587581,32587673-32587750,32588502-32589422 28 6.3
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 27 8.3
06_01_0807 - 6069998-6071326 27 8.3
04_03_0043 + 10076575-10076922 27 8.3
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887... 27 8.3
>05_03_0566 -
15521494-15521511,15521550-15521747,15521856-15522037,
15522643-15522721
Length = 158
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +3
Query: 21 CEFCEQLVKHLRDVLVANTTELEFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSD 200
C+ CE+ L N T++E L C + FK EC L + YY ++ V+
Sbjct: 47 CQICEEFATEALFYLNENETQVEIIATLHQACSKFPSFKLECTKLVD-YYVSLFFTKVTS 105
Query: 201 LKPAETCKMIGICGNLT 251
L P E C+ + +C +T
Sbjct: 106 LSPEEFCESVSLCHKVT 122
>01_01_0462 +
3422352-3422439,3423057-3423241,3423333-3423530,
3423617-3423676,3424022-3424171
Length = 226
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 21 CEFCEQLVKHLRDVLVANTTELEFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSD 200
C+ CEQ L N T+ E +L C G K +C+ L + Y P+ + VS
Sbjct: 51 CQLCEQYSTEALFYLQQNETQTEILSILHHACANVGPLKQQCITLVDYYIPLFF-LEVSM 109
Query: 201 LKPAETCKMIGIC 239
+ P + C+ + +C
Sbjct: 110 VTPEKFCESVHLC 122
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +3
Query: 21 CEFCEQLVKHLRDVLVANTTELEFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSD 200
C CE + + L + + +L C QT F+ +CL + Y +++ +++
Sbjct: 67 CSACENITSEAVNFLSEKQIQDKIMTILHDTCSQTFSFEQKCLETMDSYATLVF-AKIAE 125
Query: 201 LKPAETCKMIGICGNL 248
+KP E CK G+C ++
Sbjct: 126 IKPDEFCKQYGLCRDM 141
>11_01_0075 +
591537-591618,592410-592648,592840-593037,593129-593188,
593313-593456,594655-594819,595611-595709,596057-596125,
596216-596312,596922-597013,597085-597255,598053-598184,
598479-598559,599131-599247,599344-599433
Length = 611
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +3
Query: 21 CEFCEQLVKHLRDVLVANTTELEFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSD 200
C CE + + L + + +L C QT F+ +CL + Y +++ +++
Sbjct: 67 CSACENITSEAVNFLSEKQIQDKIRTILHDTCSQTFSFEQKCLETMDSYATLVF-AKIAE 125
Query: 201 LKPAETCKMIGICGNL 248
+KPA CK G+C ++
Sbjct: 126 IKPAAFCKQYGLCRDM 141
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 414 AAPQSKAACAFCQYFLHYLQVQLSDTRTEDKVKAAIQEACDALPDAL 554
+ P S A C C+ + ++ QL+ +T+D V I + CD LP +
Sbjct: 385 SGPFSSAMCNACETAVVWMHTQLAQNQTQDLVLQYIDQLCDRLPSPM 431
Score = 33.9 bits (74), Expect = 0.096
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 123 TGKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
TG EC + QY I + L ++ KPA+ C +G+C
Sbjct: 323 TGVVSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLC 361
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 33.9 bits (74), Expect = 0.096
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 123 TGKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
TG EC + QY I + L+++ +P++ C +G+C
Sbjct: 313 TGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 423 QSKAACAFCQYFLHYLQVQLSDTRTEDKVKAAIQEACDALPDAL 554
QS C C+ + ++Q QL+ +T+D + I + CD LP +
Sbjct: 378 QSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPM 421
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 126 GKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
G EC + +Y +I N L++ P + C +G+C
Sbjct: 306 GIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLC 343
>01_06_1670 - 39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 87 EFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGICGNLTSA 257
+F VL +CK+ G+ D + + +++PV N ++ L P GI + +SA
Sbjct: 898 DFLSVLDQVCKEVGRINDRTIASSVRHFPVPVNPMMPQLFPRIHALRAGISDDESSA 954
>10_08_0965 + 21915842-21916906
Length = 354
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 249 TSAPISPLVARELVVKVQPKLIGAEESKIARVPLAKQMEPASAAVSVLPLERMFVAAPQS 428
+SAP+ P+V R +G + A A +ME + + + L A P+S
Sbjct: 70 SSAPVLPVVVRP----ASSAAVGEQVVGKASAERAAEMERLISRLPLFTLASSLAALPKS 125
Query: 429 KAACAFCQ 452
CA CQ
Sbjct: 126 SRDCAVCQ 133
>03_06_0485 + 34242121-34243188
Length = 355
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = -2
Query: 472 CK*CRKYW------QNAQAALLCGAATNMRSSGSTDTAALAGSICFANGTRAIFDSSA 317
CK CR+YW +N C +SS S+ + + AGS GT + S+A
Sbjct: 86 CKTCRRYWTRGGALRNVPVGGGCRRNKRTKSSKSSSSTSAAGSASATGGTSSSTSSTA 143
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 141 ECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
EC + Y +I L++ P + C IG+C
Sbjct: 310 ECKQVVRDYGDMILEMLIAQASPMKLCSQIGLC 342
>03_04_0247 - 19331253-19331293,19331438-19331621
Length = 74
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 584 CVTNSLHSPLKGVGQRVARLLYCGL 510
C N S L + +R ARL YCGL
Sbjct: 14 CTCNLCASALSAISRRSARLAYCGL 38
>04_01_0253 - 3358090-3359052
Length = 320
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/69 (30%), Positives = 26/69 (37%)
Frame = +2
Query: 344 TVSKTNGAGERGGIRTAAGAHVRSGAAEQXXXXXXXXXXXXXXXATQRHQDRGQSEGRNT 523
T + T GAGE +R A G+ +G T R D + NT
Sbjct: 33 TTTTTTGAGEEA-MRAAGGSCTETGTTRTTPLRCRRRRRRRE--TTSRATDGTMTTTTNT 89
Query: 524 GGVRRAARR 550
GGVR RR
Sbjct: 90 GGVRSKGRR 98
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 368 GERGGIRTAAGAHVRSG--AAEQXXXXXXXXXXXXXXXATQRHQDRGQSEGRNTGGVRRA 541
G RGG + G V G ++ + A +++ RG++ GR G
Sbjct: 1622 GSRGGRSRSRGGKVPRGISSSPKIEFRGYSASAVSSEKAPRKYARRGRNRGRGRGLRTVR 1681
Query: 542 ARRPSTVNARSL 577
R+PS + ARS+
Sbjct: 1682 PRQPSDIGARSI 1693
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 432 PCSAAPLRTCAPAAVRIPPR 373
P +AAP R APA R PPR
Sbjct: 197 PATAAPQRMAAPAPPRSPPR 216
>03_06_0241 - 32587492-32587581,32587673-32587750,32588502-32589422
Length = 362
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 549 RRAARRTPPVLRPSLCPRSW 490
RR+ +R PP P L P++W
Sbjct: 12 RRSVKRRPPARSPELSPKAW 31
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 ISPLVARELVVKVQPKLIGAEESKIARVPLAKQMEPASAAV-SVLPLERMFVAAPQ 425
+SP A+EL+ + + + +AR+P A PA V V P + M + PQ
Sbjct: 208 VSPEKAQELMFLASRGSLPSAPTTVARMPEAHVFPPAKVTVPEVSPTKPMMLQKPQ 263
>06_01_0807 - 6069998-6071326
Length = 442
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 19 RANFANSW-SNICETFSSRILLNSNSIKFFKASASKPENSRTNVYT*PNSTIRS 177
R ++ W S I TFSSRI S S + A+ + + + T T P ST R+
Sbjct: 331 RIGRSDRWPSFIARTFSSRIPFWSASRRVLDAAEAGADAAATTTTTTPTSTART 384
>04_03_0043 + 10076575-10076922
Length = 115
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 2 CDRRCSVRILRTAGQTSARRSRREYY*TRIL*SSSRPLQANRKIQGRMSTLSRTVLSG 175
CD C R + T R+ R+ ++ R +RP +QGR T S SG
Sbjct: 25 CDTACGKRDGYSGELTGERKQRKRWWRERRASGGARPTFIEAALQGRRGTESAHRQSG 82
>01_05_0795 +
25287449-25287967,25288078-25288138,25288640-25288734,
25288827-25288939,25289480-25289648,25289777-25289816,
25289906-25289970,25290150-25290263,25290398-25290462,
25290572-25290725,25290798-25290914,25292489-25292545
Length = 522
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 123 TGKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
TG +EC + ++ + L PA+ C IG+C
Sbjct: 367 TGVANEECKQVVARHGHEMLELLQDKTPPAQVCSKIGLC 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,706,820
Number of Sequences: 37544
Number of extensions: 286226
Number of successful extensions: 1245
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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