Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5272
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -1

Query: 126 RCLWAVTTQHQVG--CELV 76
           +C W +T+ H++   C LV
Sbjct: 69  KCTWTITSYHRINLKCSLV 87


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 75  HPFKPGAPKLAFPTAHFETSSLGT 4
           HP +PGAP     T    T++  T
Sbjct: 647 HPHEPGAPATTITTITTTTTTTTT 670


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 569 LASSYTFLYLCLLPVVFSVASGLKSQ 492
           LASS  F  LC+L +  ++ + ++++
Sbjct: 27  LASSLIFTILCILTLALTLVTLVRAE 52


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 569 LASSYTFLYLCLLPVVFSVASGLKSQ 492
           LASS  F  LC+L +  ++ + ++++
Sbjct: 27  LASSLIFTILCILTLALTLVTLVRAE 52


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 569 LASSYTFLYLCLLPVVFSVASGLKSQ 492
           LASS  F  LC+L +  ++ + ++++
Sbjct: 27  LASSLIFTILCILTLALTLVTLVRAE 52


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 569 LASSYTFLYLCLLPVVFSVASGLKSQ 492
           LASS  F  LC+L +  ++ + ++++
Sbjct: 27  LASSLIFTILCILTLALTLVTLVRAE 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,880
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)