Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5271
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.1  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   3.3  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   3.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   4.4  

>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 274 KILFIYICYGIETNKNHLTFSYSK 345
           KILFIYIC    T K+ + +S SK
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSK 267


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 164 EICIVHCFYCVIYVSN*LLVRDMLVFYASF 253
           EIC  H F   +      + RDML +YASF
Sbjct: 773 EICQAH-FKTALLALRKAITRDMLEYYASF 801


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 110 HT*RWLKAFAMCLHYYIIEICI 175
           H  RWLK F++   +YI+++ I
Sbjct: 530 HIERWLKVFSVQSEFYILKLII 551


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 167  ICIVHCFYCVIYVSN*LLVRDMLVFYASFLSNTIV 271
            +C+    +  IYVS   + +D+++   S L  TIV
Sbjct: 934  LCLTSRMFSYIYVSTERMCQDVVISTTSILHKTIV 968


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,698
Number of Sequences: 5004
Number of extensions: 26539
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)