Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5271
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936           27   4.2  
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540...    26   9.7  
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442...    26   9.7  
01_03_0169 - 13405789-13407504                                         26   9.7  

>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
          Length = 838

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 23 WLCGVLLALNAITLCYEIGVN 85
          WLCG++ A + +   Y++G++
Sbjct: 29 WLCGIIAATSGLMFGYDVGIS 49


>10_08_0583 -
           18952168-18952263,18953663-18953740,18954006-18954081,
           18954687-18954735,18955271-18955469,18955761-18955799,
           18955800-18956123
          Length = 286

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 164 EICIVHCFYCVIYVSN*LLVRDMLVFYASFLS 259
           ++C VHC YC       L+V D+   +A FLS
Sbjct: 59  QLCYVHCHYC----DTVLVVSDLRSNHAHFLS 86


>01_05_0634 +
           23843152-23843272,23843441-23843628,23843876-23844205,
           23844319-23844565,23844591-23844668,23844740-23845024,
           23845139-23845225,23845365-23845415,23845625-23845761,
           23845853-23846437
          Length = 702

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 149 HYYIIEICIVHCFYCVIY 202
           H+ +I I IV+CF C+ +
Sbjct: 474 HFIVIVIAIVNCFCCIFW 491


>01_03_0169 - 13405789-13407504
          Length = 571

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 95  LRPQLHT*-RWLKAFAMCLHYYIIEICIVHCFYCVIYVSN*LLVRDMLVFYASFLSNTIV 271
           L P+L +  RWL+A A     Y++ I  V C   ++++S   L+   +    + +S    
Sbjct: 434 LAPRLESFWRWLRAAAGAALPYVLVIAAVLCVAALVWLSWPFLLHAAVQIGQALVSAVSS 493

Query: 272 RKFYLFI 292
              YLF+
Sbjct: 494 GAHYLFV 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,228,075
Number of Sequences: 37544
Number of extensions: 143492
Number of successful extensions: 212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)