Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5271
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   3.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   3.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   3.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   4.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 328 TFSYSKQKKKLEGGPG 375
           +FSY KQK +L  G G
Sbjct: 136 SFSYHKQKLRLRWGTG 151


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 3   NLASKFIGC-VACC*HSMLSLCVMKL 77
           +L   ++ C V CC  S+L+LC + L
Sbjct: 107 HLCKLWLTCDVLCCTASILNLCAIAL 132


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 3   NLASKFIGC-VACC*HSMLSLCVMKL 77
           +L   ++ C V CC  S+L+LC + L
Sbjct: 107 HLCKLWLTCDVLCCTASILNLCAIAL 132


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 3   NLASKFIGC-VACC*HSMLSLCVMKL 77
           +L   ++ C V CC  S+L+LC + L
Sbjct: 107 HLCKLWLTCDVLCCTASILNLCAIAL 132


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 200 ILRSKNNEQYKFQ*YNNASTWRRLSTTFKYVVEVSTV 90
           I+ S +N  YK+  YNN + + +      Y++ +  +
Sbjct: 81  IISSLSNN-YKYSNYNNYNNYNKKLYYKNYIINIEQI 116


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 152 YYIIEICIVHCFYCVIY 202
           Y   E C  HCF C  Y
Sbjct: 599 YVAGEQCCWHCFNCTQY 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,987
Number of Sequences: 438
Number of extensions: 1793
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)