Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5270
(308 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 108 7e-25
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 41 2e-04
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 34 0.023
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 29 0.50
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 2.0
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 27 2.0
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 27 2.0
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 2.7
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 26 4.7
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 26 4.7
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 26 4.7
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 26 4.7
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 26 4.7
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 26 4.7
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 26 4.7
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 26 4.7
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 26 4.7
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 26 6.2
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 26 6.2
U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical pr... 26 6.2
U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeo... 26 6.2
U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeo... 26 6.2
U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein. 26 6.2
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 26 6.2
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 108 bits (260), Expect = 7e-25
Identities = 50/73 (68%), Positives = 60/73 (82%)
Frame = -2
Query: 307 RNLGRVGTIVSRERHPGSFDIVHIKDSTGHTLAMRLNNVFIIGKGTKAYISLPRGKGIRL 128
RN+GRVG I RER PG+ DI+HIKDS GH+ A R++NVF+IGKG KA +SLP G GIRL
Sbjct: 186 RNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRL 245
Query: 127 TIAEERDKRIAAK 89
+IAEERDKR+A K
Sbjct: 246 SIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/65 (35%), Positives = 27/65 (41%)
Frame = -1
Query: 287 HHRVPRETSRLL*HCAHQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 108
HHR E AH G HGTH GH E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 107 QAHRS 93
+ H +
Sbjct: 460 EHHHA 464
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/56 (39%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -1
Query: 287 HHRVPRETSRLL*HCAHQGLHGTHLGHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 123
HH E H H G HGTH GH GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/74 (33%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Frame = -1
Query: 296 ACGHHRVPRETSRLL*HCAHQGLHGTHLGHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 120
A HH E H H G HGTH GH GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 119 RGAGQAHRSQGRRA 78
G H + A
Sbjct: 522 HGTHHGHHGEHHHA 535
Score = 35.1 bits (77), Expect = 0.010
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = -1
Query: 287 HHRVPRETSRLL*HCAHQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 108
HH P H G HG H GH GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 107 QAHRSQG 87
AH G
Sbjct: 690 GAHHEHG 696
Score = 34.3 bits (75), Expect = 0.018
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Frame = -1
Query: 299 GACGHHRVPRETSRLL*HCAHQGLHGTHLG--HEVEQRVHNRQGHE-GVHLAAARQGHPP 129
G+ G H T L H H G HGTH G H H+ HE G H A H
Sbjct: 649 GSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDD 708
Query: 128 ---HHRRGAGQAH 99
HH G H
Sbjct: 709 KENHHHHGHHSKH 721
Score = 32.7 bits (71), Expect = 0.054
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Frame = -1
Query: 290 GHHRVPRETSRLL*HCAHQGLHGTHLGHEVEQ-------RVHNRQGHEGVHLAAARQGHP 132
GHH H H G HG H GH H G GVH G+
Sbjct: 562 GHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYG 621
Query: 131 PHH-RRGAGQAH 99
HH GA H
Sbjct: 622 AHHGHHGAHHHH 633
Score = 32.3 bits (70), Expect = 0.071
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -1
Query: 248 HCAHQGLHGTHLGHEVEQR-VHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 99
H AH HG H H E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 31.9 bits (69), Expect = 0.094
Identities = 18/65 (27%), Positives = 20/65 (30%)
Frame = -1
Query: 287 HHRVPRETSRLL*HCAHQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 108
HH P H H HG H H H G G H H P H G
Sbjct: 509 HHHAPAHHGH---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHG 565
Query: 107 QAHRS 93
+ H +
Sbjct: 566 EHHHA 570
Score = 31.1 bits (67), Expect = 0.16
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = -1
Query: 287 HHRVPRETSRLL*HCAHQGLHGTHLGHEVEQRVHNRQGHEGVHLA-AARQG-HPPHHRRG 114
HH E H H G HG+H H H H H G H HH G
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAG 619
Query: 113 AGQAHRSQG 87
G H G
Sbjct: 620 YGAHHGHHG 628
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -1
Query: 242 AHQGLHGTHLGHEVEQRVHNRQGHEGVHL-AAARQGHP-PHHRRGAGQAHRSQ 90
AH G H +H GH H+ GH G H A A GH HH A H +
Sbjct: 437 AHHGHHESH-GHGHHSPAHH--GHHGEHHHAPAHHGHHGEHHHAPAHHGHHGE 486
Score = 29.9 bits (64), Expect = 0.38
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Frame = -1
Query: 287 HHRVPRETSRLL*HCAHQGLHGTHL-----GHEVEQRVHNRQGHEGVHLAAARQGHPPHH 123
HH P H H G HG+H GH E H+ H G H G H
Sbjct: 532 HHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH--HHAPAHHGHHGHHGSHGVHHGH 589
Query: 122 RRGAGQAHRS 93
G H +
Sbjct: 590 HESHGHGHHA 599
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = -1
Query: 242 AHQGLHGTHLGHEVEQRVHNRQG--HEGVHLAAARQGHPPHHRRGAGQAH 99
AH G HG H H H G H G H GH H A H
Sbjct: 622 AHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGHHGTHHSLAHHGH 669
Score = 29.1 bits (62), Expect = 0.66
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Frame = -1
Query: 242 AHQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG--AGQAHRSQGRRAV 75
AH G HG H H H GH G H GH H G A H G V
Sbjct: 559 AHHGHHGEH--HHAPAH-HGHHGHHGSH--GVHHGHHESHGHGHHAPAHHGHHGEHGV 611
Score = 28.7 bits (61), Expect = 0.87
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Frame = -1
Query: 242 AHQGLHG------THLGHEVEQRVHNRQGHEGV-HLAAARQGHPPHHRRGAGQAH 99
AH G HG H GH E H+ GH G H A A GH H G H
Sbjct: 501 AHHGHHGEHHHAPAHHGHHGEHGTHH--GHHGEHHHAPAHHGH--HGEHGTHHGH 551
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Frame = -1
Query: 242 AHQGLHGT-HLGHEVE-QRVHNRQGHEG-------VHLAAARQGHPPHHRRGAGQAH 99
A LH HL E+ Q+V + H+G + + GH HH GA H
Sbjct: 36 ARSALHDIEHLAKELHFQKVFDHHAHDGHISLKGFLSFISPHHGHHTHHAHGAHPGH 92
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.023
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -1
Query: 248 HCAHQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGQAHRSQG 87
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 28.7 bits (61), Expect(2) = 0.14
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 248 HC-AHQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHH 123
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 25.8 bits (54), Expect = 6.2
Identities = 23/72 (31%), Positives = 25/72 (34%)
Frame = -1
Query: 299 GACGHHRVPRETSRLL*HCAHQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 120
G GHHR R H H G HG+ G R GH G +R G P
Sbjct: 275 GGSGHHRGGR-------HGGH-GRHGSCSGSP-----RGRHGHGGHGGHGSRSGSPGGRH 321
Query: 119 RGAGQAHRSQGR 84
G H GR
Sbjct: 322 GHGGSGHHRGGR 333
Score = 21.4 bits (43), Expect(2) = 0.14
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -1
Query: 134 PPHHRRGAGQAHRSQGRRA 78
PPH R G H G R+
Sbjct: 450 PPHRRGGHCHHHHHNGHRS 468
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 29.5 bits (63), Expect = 0.50
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 239 HQGLHGTHLGHEVEQRVHNRQGHEG 165
HQG HG G + R H+R H G
Sbjct: 62 HQGNHGNSYGRREDDRSHSRDNHGG 86
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 191 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 96
VH+ H+G H R+ H HH G H+
Sbjct: 115 VHDDHHHDGHHKKHGRKEHDHHHGHHHGHHHK 146
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 141 LPRGSEMYAFVPLPIMNTLFNLMAKVCPVESLMCTMSKE 257
L G+EM P + L ++ K P + LMC SKE
Sbjct: 300 LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 141 LPRGSEMYAFVPLPIMNTLFNLMAKVCPVESLMCTMSKE 257
L G+EM P + L ++ K P + LMC SKE
Sbjct: 300 LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 136 CPCRAAARCTPSCP-CRL*TRCSTSWPR-CVP 225
C C+ A C P CP + + CS + R C+P
Sbjct: 54 CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 239 HQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 114
H G TH H+ + GH G H + + H H G
Sbjct: 43 HHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHG 84
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Frame = +1
Query: 133 GCP-CRAAARCTPSCPCR 183
G P C A + CTP C CR
Sbjct: 881 GAPKCEAGSACTPGCFCR 898
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 100 CAC-PAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTS 207
C+C P P C C+A++ C SC CS+S
Sbjct: 16 CSCSPLPST--SSCGCQASSSCANSCRSTCRPTCSSS 50
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 209 HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 114
H + Q+ +NR G H ++ G PP H+RG
Sbjct: 841 HSILQQHNNRAGS---HSGSSGAGRPPTHQRG 869
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 209 HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 114
H + Q+ +NR G H ++ G PP H+RG
Sbjct: 867 HSILQQHNNRAGS---HSGSSGAGRPPTHQRG 895
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 209 HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 114
H + Q+ +NR G H ++ G PP H+RG
Sbjct: 841 HSILQQHNNRAGS---HSGSSGAGRPPTHQRG 869
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 209 HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 114
H + Q+ +NR G H ++ G PP H+RG
Sbjct: 867 HSILQQHNNRAGS---HSGSSGAGRPPTHQRG 895
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 209 HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 114
H + Q+ +NR G H ++ G PP H+RG
Sbjct: 708 HSILQQHNNRAGS---HSGSSGAGRPPTHQRG 736
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 209 HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 114
H + Q+ +NR G H ++ G PP H+RG
Sbjct: 841 HSILQQHNNRAGS---HSGSSGAGRPPTHQRG 869
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 209 HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 114
H + Q+ +NR G H ++ G PP H+RG
Sbjct: 867 HSILQQHNNRAGS---HSGSSGAGRPPTHQRG 895
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 100 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWPRCVPWSP-*CAQCQRSRDV 267
C C APR PCR A P C C PRC +P C+ + RDV
Sbjct: 183 CVCSAPRP----VPCRCGA---PPMEC---PNCDMPAPRCSMMAPMECSMRRMRRDV 229
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 239 HQGLHGTHLGHEVEQRVH-NRQGHEGVHLAAARQGH 135
H+ HG L HE QR R H+ +A +GH
Sbjct: 10 HRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGH 45
>U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical
protein F15A8.7 protein.
Length = 472
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/45 (28%), Positives = 15/45 (33%)
Frame = -1
Query: 233 GLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 99
G H H E HN H +H + G P R A H
Sbjct: 422 GSHEAHAHSATEHGAHNHSEHHQLHRSIFHHGAPTSIRSQAQVPH 466
>U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform a protein.
Length = 542
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 241 AQCQRSRDVSRGTRWCPHAPS 303
A CQ S D S GT P APS
Sbjct: 515 ASCQASNDDSDGTSGSPDAPS 535
>U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform b protein.
Length = 540
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 241 AQCQRSRDVSRGTRWCPHAPS 303
A CQ S D S GT P APS
Sbjct: 513 ASCQASNDDSDGTSGSPDAPS 533
>U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein.
Length = 542
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 241 AQCQRSRDVSRGTRWCPHAPS 303
A CQ S D S GT P APS
Sbjct: 515 ASCQASNDDSDGTSGSPDAPS 535
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 239 HQGLHGTHLGHEVEQRVH-NRQGHEGVHLAAARQGH 135
H+ HG L HE QR R H+ +A +GH
Sbjct: 10 HRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGH 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,735,624
Number of Sequences: 27780
Number of extensions: 131677
Number of successful extensions: 545
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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